当前解析结果
SmilChr01G003653| 统一新 Gene ID | SmilChr01G003653 |
|---|---|
| 名称 | SmilChr01G003653 |
| 描述 | uncharacterized SmilChr01G003653 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 54991384 - 54993922 / + |
| NCBI Gene ID | LOC130994844 |
|---|---|
| GeneID | 130994844 |
| locus_tag | - |
| NCBI Name | LOC130994844 |
| 原始查询 | SmilChr01G003653 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WD repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:843508]; symbol=AT1G71780; hit=AT1G71780; species=arabidopsis; confidence=high |
| 产物 | WD repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:843508]; symbol=AT1G71780; hit=AT1G71780; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G71780 (AT1G71780)WD repeat protein [Source:NCBI gene (formerly Entrezgene);Acc:843508] identity=59.1; qcov=0.943; evalue=1.89e-75; confidence=high |
| Rice | Os01g0715800- identity=49.4; qcov=0.833; evalue=3.15e-49; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994844 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057775931.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057775931.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057775931.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775931.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775931.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:54991498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B127,C12,C33,D6 |
Chr1:54991515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:54991549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B127,C12,C33,D6 |
Chr1:54991596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B78 |
Chr1:54991701 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C6 |
Chr1:54991701 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C6 |
Chr1:54993450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,D6 |
Chr1:54993490 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B114 |
Chr1:54993490 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B114 |
Chr1:54993539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C57 |
Chr1:54993605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B127,C12,C33,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。