Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003656`

染色体: Chr01 坐标: 55005961-55010563 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003656`
名称	SmilChr01G003656
描述	uncharacterized protein At1g76660-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55005961 - 55010563 / `+`

ID 对照

NCBI Gene ID	`LOC130994870`
GeneID	`130994870`
locus_tag	`-`
NCBI Name	`LOC130994870`
原始查询	`SmilChr01G003656`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843999]; symbol=AT1G76660; hit=AT1G76660; species=arabidopsis; confidence=high
产物	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843999]; symbol=AT1G76660; hit=AT1G76660; species=arabidopsis; confidence=high
Arabidopsis	`AT1G76660` (AT1G76660) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:843999] identity=55.5; qcov=0.977; evalue=1.35e-153; confidence=high
Rice	`Os01g0103800` (OsDW1-01g) - identity=46.8; qcov=1.07; evalue=1.34e-120; confidence=high
GO	-
KEGG	-
Pfam	PF30477 (At1g76660)
InterPro	-
eggNOG	-
NR	GeneID:130994870

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057775966.1`
2	Nucleus	细胞核	0.00000	`XP_057775966.1`
3	Chromosome	染色体	0.00000	`XP_057775966.1`
4	Centromere	着丝粒	0.00000	`XP_057775966.1`
5	Chromatin	染色质	0.00000	`XP_057775966.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55008555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr1:55008621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B85,C35
`Chr1:55008898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr1:55008944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,B57
`Chr1:55009082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C2,C32,C68,D10,D11
`Chr1:55009125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr1:55009182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,D7
`Chr1:55009531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr1:55010025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,C19,C21
`Chr1:55010167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D11,D7
`Chr1:55010172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775966.1

478 aa

239

478

At1g76660

PF30477 At1g76660 5-473 aa

XP_057775975.1

478 aa

239

478

At1g76660

PF30477 At1g76660 5-473 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775966.1`	Pfam	`PF30477`	At1g76660	Family	5	473	6e-178	593.4	At1g76660-like
`XP_057775975.1`	Pfam	`PF30477`	At1g76660	Family	5	473	6e-178	593.4	At1g76660-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919983.1
AACAGTGACAGAAAAATAATAAAAGGAAAAGAAATATGAAGAAAAATAGGAATTTTATCAAACGCTTCAATCAATCAACGACCCAGAGAGTACTGATCAGATCTAGGCCCTTTGCTTTCTTTCCTTTTCATACGCCATTAACCCCTCTCCCTCTCCCTCTCTACTTAGCTACATTATCACTCAACTTCTACGGATCTTCACGCTCTTTGCTCTCTCCTACCAGCCCAACTCACAGAGATGCGAATACTTCTTCTTTCAGG...

XM_057919992.1
GAAATATGAAGAAAAATAGGAATTTTATCAAACGCTTCAATCAATCAACGACCCAGAGAGTACTGATCAGATCTAGGCCCTTTGCTTTCTTTCCTTTTCATACGCCATTAACCCCTCTCCCTCTCCCTCTCTACTTAGCTACATTATCACTCAACTTCTACGGATCTTCACGCTCTTTGCTCTCTCCTACCAGCCCAACTCACAGAGATGCGAATACTTCTTCTTTCAGGTGAATTGGAATAGTATTATTTAATTATTTT...

CDS

2 records

下载 CDS FASTA

LOC130994870
ATGGCATCAGTGCAGAACCGGTTTCTGCAGCCACAGCAACCTCCATCGCCTCGGCGCAAACGATGGGCAGGTTGTTTGGGTGGACTGTCTTGCTTCAGGACACAAAAAGGTGGAAAGCGTATTGTTCCTGCATCACGCATCCCTGATGCCAATGCTATATCAAATCAGCCAAATGGGCCTCAAGGTGGTGGATTGCCCAATCAGGCTACTGGCGTTGCTTTGTCTCTTTTAGCTCCACCATCCTCACCGGCATCGTTCTC...

Protein

2 records

下载 Protein FASTA

XP_057775966.1
MASVQNRFLQPQQPPSPRRKRWAGCLGGLSCFRTQKGGKRIVPASRIPDANAISNQPNGPQGGGLPNQATGVALSLLAPPSSPASFSNSGLPSTAQSPNCFLSANSPGGPSSTMFVTGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPYAHFLSSSAKFKTTDKNGYPAANDLQSTYLLYPGSPASTLRSPISRTSGDCLSSSFNEREFPSQWDPSIPSEGSPYAKSDSGMFLGAQAAGASKSRQD...

XP_057775975.1
MASVQNRFLQPQQPPSPRRKRWAGCLGGLSCFRTQKGGKRIVPASRIPDANAISNQPNGPQGGGLPNQATGVALSLLAPPSSPASFSNSGLPSTAQSPNCFLSANSPGGPSSTMFVTGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPYAHFLSSSAKFKTTDKNGYPAANDLQSTYLLYPGSPASTLRSPISRTSGDCLSSSFNEREFPSQWDPSIPSEGSPYAKSDSGMFLGAQAAGASKSRQD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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