Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003675`

染色体: Chr01 坐标: 55177429-55179871 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003675`
名称	SmilChr01G003675
描述	uncharacterized SmilChr01G003675
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55177429 - 55179871 / `-`

ID 对照

NCBI Gene ID	`LOC130995083`
GeneID	`130995083`
locus_tag	`-`
NCBI Name	`LOC130995083`
原始查询	`SmilChr01G003675`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:838667]; symbol=AT1G20770; hit=AT1G20770; species=arabidopsis; confidence=medium
产物	coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:838667]; symbol=AT1G20770; hit=AT1G20770; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G20770` (AT1G20770) coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:838667] identity=42; qcov=0.931; evalue=2.86e-37; confidence=medium
Rice	`Os04g0509200` - identity=42.1; qcov=0.868; evalue=2.48e-30; confidence=medium
GO	GO:0042406 (extrinsic component of endoplasmic reticulum membrane); GO:0051082 (GO:0051082); GO:0070072 (vacuolar proton-transporting V-type ATPase complex assembly)
KEGG	-
Pfam	PF21730 (Vma22_CCDC115)
InterPro	-
eggNOG	-
NR	GeneID:130995083

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776223.1`
2	Cytoplasm	细胞质	0.60000	`XP_057776226.1`
3	Chromosome	染色体	0.40000	`XP_057776223.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057776226.1`
5	Nucleoplasm	核质	0.40000	`XP_057776223.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55178004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr1:55178741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,C35
`Chr1:55178742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B126,B63,B65,C43
`Chr1:55178794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C35
`Chr1:55179012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C35
`Chr1:55179064`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C87
`Chr1:55179064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:55179252`	`CA`	`C`	1bp_deletion	frameshift_variant	117	A10,A13,A18,A24,A4,A6,A8,B100,B101,B102,B104,B105,B106,B108,B110,B112,B113,B118,B119,B12,B120,B122,B123,B125,B126,B129,B130,B131,B133,B134,B137,B139,B15,B16,B18,B19,B21,B23,B24,B27,B3,B30,B33,B35,B37,B41,B45,B46,B49,B5,B51,B52,B56,B57,B58,B61,B67,B68,B7,B71,B76,B77,B78,B79,B83,B84,B85,B87,B90,B91,B92,B94,B96,C1,C11,C12,C14,C21,C22,C23,C24,C25,C28,C31,C35,C36,C37,C39,C40,C42,C44,C46,C47,C5,C53,C56,C57,C58,C59,C6,C60,C64,C66,C69,C72,C74,C77,C78,C8,C83,C85,C86,D1,D11,D2,D5,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776223.1

208 aa

104

208

Vma22_CCDC115

PF21730 Vma22_CCDC115 18-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776223.1`	Pfam	`PF21730`	Vma22_CCDC115	Family	18	178	8.9e-11	43.1	Vma22/CCDC115

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920240.1
AGATTAATTCCTATGTCTTCTCTGAAAGTTCTTTTTTTTTTTTGATAAATTCTAGTACTTCTTTCTGTTTTATTTATCCTTTTTTGTTGAAAAATTACAAAATCGTTGTCTGCGTCGAACAAGCGCTAACAGTTTCCAATCCAAATTTCTTATTCTGCAATAGATTTGCACAGAGTTTAATTTCTCAAAAAAATGCCGAGTTCCGAAAATAGGACTGAATCGACTGATAAGCTCATGGAAACTGATCAACACGTATTGAA...

XM_057920243.1
TACCCACTCGTTTCCTGGATCCTATTTTTTGAACACAACTTCTCATGTTTTGCTCAAAAATTAGGATTTCGGAAGCTACAATTTCAACTTTGCTTATCATTTTCTGGATAGTTGATTTTTAAGAAAAACCTCGATTTCATTAACTATGAGTAGATGCTTTGTTTTTCAGCAGCTTGAGCCTTTTTGCTTGATGTGTTTGTTTACTTTGAGGATTTGCTCTGGATGGCTGGAGCTAGCCAGTGCTCGACATTCAATGGGCG...

CDS

2 records

下载 CDS FASTA

LOC130995083
ATGCCGAGTTCCGAAAATAGGACTGAATCGACTGATAAGCTCATGGAAACTGATCAACACGTATTGAATTTCTTAGATTCCATGGATACTTATCTAGTTCTTATGGATTCCTTATCATCAACTCTTCGTCAGGGATGGCTGGAGCTAGCCAGTGCTCGACATTCAATGGGCGCTGCTCGTGTCAGCAGCGCCTTGTTTAACCTCAAATCTCATCATGCTTCAACAACACTGGAAATAGACAATGTTGACGTCAATGTAGA...

LOC130995083
ATGAGTAGATGCTTTGTTTTTCAGCAGCTTGAGCCTTTTTGCTTGATGTGTTTGTTTACTTTGAGGATTTGCTCTGGATGGCTGGAGCTAGCCAGTGCTCGACATTCAATGGGCGCTGCTCGTGTCAGCAGCGCCTTGTTTAACCTCAAATCTCATCATGCTTCAACAACACTGGAAATAGACAATGTTGACGTCAATGTAGAGCTACCGCACCTCACATTGTGCAAATGGGCGTCCTCGGATGATTCTGAAAAGAATTC...

Protein

2 records

下载 Protein FASTA

XP_057776223.1
MPSSENRTESTDKLMETDQHVLNFLDSMDTYLVLMDSLSSTLRQGWLELASARHSMGAARVSSALFNLKSHHASTTLEIDNVDVNVELPHLTLCKWASSDDSEKNSGGAKFKDDELSPPPKPESPRTQDEEPQDRRAESGESPVSPDDHAQQARSRSLSMFGTLVSPKLRATQTSFERALEMLVEISNVRASLLHAHDQVQKDLKAAK

XP_057776226.1
MSRCFVFQQLEPFCLMCLFTLRICSGWLELASARHSMGAARVSSALFNLKSHHASTTLEIDNVDVNVELPHLTLCKWASSDDSEKNSGGAKFKDDELSPPPKPESPRTQDEEPQDRRAESGESPVSPDDHAQQARSRSLSMFGTLVSPKLRATQTSFERALEMLVEISNVRASLLHAHDQVQKDLKAAK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器