当前解析结果
SmilChr01G003691| 统一新 Gene ID | SmilChr01G003691 |
|---|---|
| 名称 | SmilChr01G003691 |
| 描述 | AT-hook motif nuclear-localized protein 10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 55276083 - 55279897 / - |
| NCBI Gene ID | LOC130995232 |
|---|---|
| GeneID | 130995232 |
| locus_tag | - |
| NCBI Name | LOC130995232 |
| 原始查询 | SmilChr01G003691 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AT-hook motif nuclear-localized protein 10 |
| 产物 | AT-hook motif nuclear-localized protein 10 |
| Arabidopsis | AT2G33620 (AT2G33620)AT hook motif DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:817928] identity=53.1; qcov=0.914; evalue=3.57e-89; confidence=high |
| Rice | Os08g0512400 (P0711H09.10-2)- identity=54; qcov=0.951; evalue=1.15e-90; confidence=high |
| GO | GO:0003680 (minor groove of adenine-thymine-rich DNA binding) |
| KEGG | - |
| Pfam | PF02178 (AT_hook); PF03479 (PCC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995232 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776420.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057776420.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057776420.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057776420.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057776420.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:55276319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C31,C5 |
Chr1:55276328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C62 |
Chr1:55276338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr1:55276442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,A15,B32,B66,C35 |
Chr1:55277201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B139,C25 |
Chr1:55278858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C82 |
Chr1:55279062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,D10 |
Chr1:55279097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr1:55279132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776420.1PF02178
AT_hook 77-88 aa
PF02178
AT_hook 137-149 aa
PF03479
PCC 161-278 aa
XP_057776429.1PF02178
AT_hook 77-88 aa
PF02178
AT_hook 137-149 aa
PF03479
PCC 161-278 aa
XP_057776438.1PF02178
AT_hook 77-88 aa
PF02178
AT_hook 137-149 aa
PF03479
PCC 161-278 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776420.1 |
Pfam | PF02178 |
AT_hook | Motif | 77 | 88 | 0.0017 | 18.7 | AT hook motif |
XP_057776420.1 |
Pfam | PF02178 |
AT_hook | Motif | 137 | 149 | 0.0017 | 18.7 | AT hook motif |
XP_057776420.1 |
Pfam | PF03479 |
PCC | Domain | 161 | 278 | 4.9e-35 | 120.9 | Plants and Prokaryotes Conserved (PCC) domain |
XP_057776429.1 |
Pfam | PF02178 |
AT_hook | Motif | 77 | 88 | 0.0017 | 18.7 | AT hook motif |
XP_057776429.1 |
Pfam | PF02178 |
AT_hook | Motif | 137 | 149 | 0.0017 | 18.7 | AT hook motif |
XP_057776429.1 |
Pfam | PF03479 |
PCC | Domain | 161 | 278 | 4.9e-35 | 120.9 | Plants and Prokaryotes Conserved (PCC) domain |
XP_057776438.1 |
Pfam | PF02178 |
AT_hook | Motif | 77 | 88 | 0.0017 | 18.7 | AT hook motif |
XP_057776438.1 |
Pfam | PF02178 |
AT_hook | Motif | 137 | 149 | 0.0017 | 18.7 | AT hook motif |
XP_057776438.1 |
Pfam | PF03479 |
PCC | Domain | 161 | 278 | 4.9e-35 | 120.9 | Plants and Prokaryotes Conserved (PCC) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。