当前解析结果
SmilChr01G003704| 统一新 Gene ID | SmilChr01G003704 |
|---|---|
| 名称 | SmilChr01G003704 |
| 描述 | mitotic spindle checkpoint protein BUBR1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 55410798 - 55415002 / - |
| NCBI Gene ID | LOC130995341 |
|---|---|
| GeneID | 130995341 |
| locus_tag | - |
| NCBI Name | LOC130995341 |
| 原始查询 | SmilChr01G003704 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitotic spindle checkpoint protein BUBR1 |
| 产物 | mitotic spindle checkpoint protein BUBR1 |
| Arabidopsis | AT2G33560 (BUBR1)BUB1-related (BUB1: budding uninhibited by benzymidazol 1) [Source:NCBI gene (formerly Entrezgene);Acc:817921] identity=57.8; qcov=1; evalue=7.27e-150; confidence=high |
| Rice | Os02g0193600 (P0437H03.124)- identity=54.9; qcov=0.928; evalue=6.6e-134; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0007094 (mitotic spindle assembly checkpoint signaling); GO:0051754 (meiotic sister chromatid cohesion, centromeric) |
| KEGG | - |
| Pfam | PF08311 (Mad3_BUB1_I) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995341 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776577.1 |
| 2 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057776577.1 |
| 3 | Spindle | Spindle | 1.00000 | XP_057776577.1 |
| 4 | Spindle pole | Spindle pole | 1.00000 | XP_057776577.1 |
| 5 | Chromosome | 染色体 | 0.80000 | XP_057776577.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:55411027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B103,C40 |
Chr1:55411039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B66,B67,B71 |
Chr1:55411384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:55411553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:55411565 |
G |
GA |
1bp_insertion | frameshift_variant | 112 | A1,A16,A18,A19,A2,A22,A4,A5,A7,A9,B1,B100,B101,B108,B111,B112,B115,B117,B118,B12,B121,B125,B128,B13,B132,B135,B136,B137,B19,B20,B22,B23,B25,B27,B28,B29,B30,B33,B4,B40,B44,B46,B47,B48,B50,B53,B55,B56,B57,B60,B61,B64,B67,B69,B7,B72,B75,B76,B77,B79,B80,B86,B88,B9,B91,B93,B94,B95,B96,B98,B99,C1,C10,C14,C15,C16,C18,C19,C21,C24,C25,C26,C27,C28,C3,C30,C31,C33,C34,C36,C37,C42,C45,C46,C50,C53,C54,C56,C57,C58,C59,C62,C65,C7,C70,C71,C73,C75,C80,C81,C84,D2 |
Chr1:55411567 |
AG |
A |
1bp_deletion | frameshift_variant | 112 | A1,A16,A18,A19,A2,A22,A4,A5,A7,A9,B1,B100,B101,B108,B111,B112,B115,B117,B118,B12,B121,B125,B128,B13,B132,B135,B136,B137,B19,B20,B22,B23,B25,B27,B28,B29,B30,B33,B4,B40,B44,B46,B47,B48,B50,B53,B55,B56,B57,B60,B61,B64,B67,B69,B7,B72,B75,B76,B77,B79,B80,B86,B88,B9,B91,B93,B94,B95,B96,B98,B99,C1,C10,C14,C15,C16,C18,C19,C21,C24,C25,C26,C27,C28,C3,C30,C31,C33,C34,C36,C37,C42,C45,C46,C50,C53,C54,C56,C57,C58,C59,C62,C65,C7,C70,C71,C73,C75,C80,C81,C84,D2 |
Chr1:55412431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B105,C83 |
Chr1:55412992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B68,C11,C35,C69 |
Chr1:55413304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:55413338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr1:55414020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,C74,C8,D7 |
Chr1:55414195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,A15,B139 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776577.1PF08311
Mad3_BUB1_I 69-190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776577.1 |
Pfam | PF08311 |
Mad3_BUB1_I | Repeat | 69 | 190 | 2.4e-43 | 147.7 | Mad3/BUB1 homology region 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。