Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003715`

染色体: Chr01 坐标: 55486465-55490551 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003715`
名称	SmilChr01G003715
描述	guanosine nucleotide diphosphate dissociation inhibitor 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55486465 - 55490551 / `-`

ID 对照

NCBI Gene ID	`LOC130995452`
GeneID	`130995452`
locus_tag	`-`
NCBI Name	`LOC130995452`
原始查询	`SmilChr01G003715`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	guanosine nucleotide diphosphate dissociation inhibitor 2-like
产物	guanosine nucleotide diphosphate dissociation inhibitor 2-like
Arabidopsis	`AT3G59920` (GDI2) RAB GDP dissociation inhibitor 2 [Source:NCBI gene (formerly Entrezgene);Acc:825162] identity=82; qcov=1; evalue=0; confidence=high
Rice	`Os05g0304400` (OsGDI2) - identity=84.9; qcov=1; evalue=0; confidence=high
GO	GO:0005093 (Rab GDP-dissociation inhibitor activity); GO:0005737 (cytoplasm); GO:0007264 (small GTPase-mediated signal transduction); GO:0015031 (protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	-
Pfam	PF00996 (GDI); PF01593 (Amino_oxidase)
InterPro	-
eggNOG	-
NR	GeneID:130995452

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057776721.1`
2	Cytoplasm	细胞质	0.80000	`XP_057776721.1`
3	Nucleus	细胞核	0.00000	`XP_057776721.1`
4	Chromosome	染色体	0.00000	`XP_057776721.1`
5	Centromere	着丝粒	0.00000	`XP_057776721.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55486651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:55486807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:55486960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B83,C59
`Chr1:55486975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr1:55487103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B130,B21
`Chr1:55487134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr1:55487257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:55487463`	`C`	`CG`	1bp_insertion	frameshift_variant	187	A1,A10,A13,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B100,B102,B104,B105,B106,B107,B109,B11,B110,B111,B112,B115,B117,B118,B119,B121,B122,B123,B124,B125,B127,B128,B129,B13,B130,B131,B132,B135,B136,B137,B14,B15,B16,B18,B19,B2,B20,B21,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B55,B56,B57,B6,B60,B61,B62,B63,B64,B67,B69,B7,B70,B71,B72,B73,B77,B79,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B9,B90,B92,B96,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C21,C22,C25,C26,C27,C28,C3,C30,C31,C33,C35,C36,C37,C39,C4,C44,C45,C46,C47,C48,C52,C54,C55,C56,C58,C59,C6,C61,C65,C69,C7,C70,C71,C72,C73,C74,C76,C77,C78,C79,C80,C81,C83,C84,C85,C86,C87,C9,D1,D10,D2,D4,D6,D7,D8
`Chr1:55488512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B118,B46,B86,C44
`Chr1:55489179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr1:55489455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B37,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776721.1

461 aa

230

461

GDI

Amino_oxidase

PF00996 GDI 1-450 aa PF01593 Amino_oxidase 70-283 aa

XP_057776729.1

444 aa

222

444

GDI

Amino_oxidase

PF00996 GDI 1-433 aa PF01593 Amino_oxidase 70-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776721.1`	Pfam	`PF00996`	GDI	Family	1	450	1.1e-217	723.5	GDP dissociation inhibitor
`XP_057776721.1`	Pfam	`PF01593`	Amino_oxidase	Domain	70	283	0.00016	21.8	Flavin containing amine oxidoreductase
`XP_057776729.1`	Pfam	`PF00996`	GDI	Family	1	433	8.5e-224	743.6	GDP dissociation inhibitor
`XP_057776729.1`	Pfam	`PF01593`	Amino_oxidase	Domain	70	283	0.00018	21.7	Flavin containing amine oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920746.1
TTCGTATTTTAATATAGATTAATTCATGTAGTGTTCGTTATTCAAATAAAAATTTGGTTTCATCGCTTTTAATTTAGTAAAAATTCTCAATCTTGTTCTACGAAAACCCCAGTTTTAATTTTAATGACACCTGGCATCACATATAGAATAATTAATTAAAAATGAACGAAAATGCAATCACGCAAGTTTGAAAATGATGCGCAGGAAATTAGTAGACAGTAGTTGAAGAATCAAGGCAAACAACCCAACTCATCTCCTCT...

XM_057920738.1
TTCGTATTTTAATATAGATTAATTCATGTAGTGTTCGTTATTCAAATAAAAATTTGGTTTCATCGCTTTTAATTTAGTAAAAATTCTCAATCTTGTTCTACGAAAACCCCAGTTTTAATTTTAATGACACCTGGCATCACATATAGAATAATTAATTAAAAATGAACGAAAATGCAATCACGCAAGTTTGAAAATGATGCGCAGGAAATTAGTAGACAGTAGTTGAAGAATCAAGGCAAACAACCCAACTCATCTCCTCT...

CDS

2 records

下载 CDS FASTA

LOC130995452
ATGGATGAAGAGTACGATGTGATAGTGCTAGGAACTGGTCTCAAGGAATGCATCCTCAGTGGTCTTCTCTCCGTTGATGGCCTCAAGGTTCTGCATATGGATCGCAATGACTATTATGGTGGTGAATCGACTTCTCTTAATCTTATCCAGTTGTGGAAGAGGTTTAGAGGAGGTGATAATCCTCCGGCACATTTGGGTTCTAGTAGAGATTACAACGTCGATATGATCCCAAAGTATATAATGGCGAATGGTGCTCTTGT...

Protein

2 records

下载 Protein FASTA

XP_057776721.1
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGGDNPPAHLGSSRDYNVDMIPKYIMANGALVRVLIHTDVTKYLSFKAVEGSYVYNKGKIHKVPATDMEALKSPLMGFFEKRRARTFFSYVHNYNESDPKTHEGMDLTRVTTKELFAKYGLDENTVDFIGHAVALHRDDYYLDEPALDTVKRMQLYAESFARFGGGSSYIYPLYGLAELPQAFARLSAVYGGTYMLNKPDCKVEF...

XP_057776729.1
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGGDNPPAHLGSSRDYNVDMIPKYIMANGALVRVLIHTDVTKYLSFKAVEGSYVYNKGKIHKVPATDMEALKSPLMGFFEKRRARTFFSYVHNYNESDPKTHEGMDLTRVTTKELFAKYGLDENTVDFIGHAVALHRDDYYLDEPALDTVKRMQLYAESFARFGGGSSYIYPLYGLAELPQAFARLSAVYGGTYMLNKPDCKVEF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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