Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003732`

染色体: Chr01 坐标: 55607009-55610174 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003732`
名称	SmilChr01G003732
描述	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55607009 - 55610174 / `-`

ID 对照

NCBI Gene ID	`LOC130995604`
GeneID	`130995604`
locus_tag	`-`
NCBI Name	`LOC130995604`
原始查询	`SmilChr01G003732`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic
产物	6%2C7-dimethyl-8-ribityllumazine synthase%2C chloroplastic
Arabidopsis	`AT2G44050` (COS1) 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Source:NCBI gene (formerly Entrezgene);Acc:819010] identity=80.2; qcov=0.711; evalue=5.93e-99; confidence=high
Rice	`Os04g0497400` (OsLS) - identity=79.2; qcov=0.655; evalue=4.1e-87; confidence=high
GO	GO:0000906 (6,7-dimethyl-8-ribityllumazine synthase activity); GO:0005622 (intracellular anatomical structure); GO:0009231 (riboflavin biosynthetic process); GO:0009349 (riboflavin synthase complex)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00885 (DMRL_synthase)
InterPro	-
eggNOG	-
NR	GeneID:130995604

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776944.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057776944.1`
3	Nucleus	细胞核	0.00000	`XP_057776944.1`
4	Chromosome	染色体	0.00000	`XP_057776944.1`
5	Centromere	着丝粒	0.00000	`XP_057776944.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55607745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C78
`Chr1:55608531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:55609505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B2,B7,C2,D4
`Chr1:55609549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776944.1

273 aa

136

273

DMRL_synthase

PF00885 DMRL_synthase 91-225 aa

XP_057776949.1

253 aa

126

253

DMRL_synthase

PF00885 DMRL_synthase 91-223 aa

XP_057776955.1

235 aa

118

235

DMRL_synthase

PF00885 DMRL_synthase 91-229 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776944.1`	Pfam	`PF00885`	DMRL_synthase	Domain	91	225	5e-49	166.5	6,7-dimethyl-8-ribityllumazine synthase
`XP_057776949.1`	Pfam	`PF00885`	DMRL_synthase	Domain	91	223	9.4e-49	165.6	6,7-dimethyl-8-ribityllumazine synthase
`XP_057776955.1`	Pfam	`PF00885`	DMRL_synthase	Domain	91	229	1.2e-51	175.0	6,7-dimethyl-8-ribityllumazine synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920972.1
TTTAATTACTCGAACCATATTGTTTTGGAGTAAATATTACAAGCATAATAAATCGTGGTAACACTAACATCTCGATTTATTCCGACTTGATTTAAGACAATTCAAATACAGTGTAACAGTGCTTCTAAACCTAATCAATTGATTCAATTCATCTAACCCTTACACAAGAAATTGGGACTGCCGCTTCACATTTGCCTTTTTCTGCACCCAATTCGAGCTCTTCATACACACTAAAATGGCTTCGTTTGCTGCAAATTCAT...

XM_057920961.1
ATTTATTCCGACTTGATTTAAGACAATTCAAATACAGTGTAACAGTGCTTCTAAACCTAATCAATTGATTCAATTCATCTAACCCTTACACAAGAAATTGGGACTGCCGCTTCACATTTGCCTTTTTCTGCACCCAATTCGAGCTCTTCATACACACTAAAATGGCTTCGTTTGCTGCAAATTCATCTCTTCTCTCTCCAAATTCGCTCCGTAGTCCAGCAAAATCTTCCATCAGCTCTTCTCCCTTCCGCTGCCTCTGC...

CDS

3 records

下载 CDS FASTA

LOC130995604
ATGGCTTCGTTTGCTGCAAATTCATCTCTTCTCTCTCCAAATTCGCTCCGTAGTCCAGCAAAATCTTCCATCAGCTCTTCTCCCTTCCGCTGCCTCTGCATTTCGTTTAACAATAACGATAAACCCACAAATCTAGCAGCAACTACTGCTCACCCACTTTCTTCGTCGGCCCTCCAGAGTCACAAAGGTTTGGGATTATGGGAAAAGAAAGAATCATCCTCACAGACTTCAGCTGTTCGACATTTGACCGGCTCGCTTAC...

Protein

3 records

下载 Protein FASTA

XP_057776944.1
MASFAANSSLLSPNSLRSPAKSSISSSPFRCLCISFNNNDKPTNLAATTAHPLSSSALQSHKGLGLWEKKESSSQTSAVRHLTGSLTSAEGLRFAIVVARFNEIVTRPLLEGALDTFKRYSVKEEDIDVVWVPGSFEIGLVAEKLGKSRKYQAVLCIGAVIRGDTSHYDAVANSAASGVLSAGLSSGVPCIFGVLTCDDMDQALNRAGGKAGNKGSETALTAVSSLYTLFIGSLHLVSSYSKWHYPVYRYYQLLKLEQLV...

XP_057776949.1
MASFAANSSLLSPNSLRSPAKSSISSSPFRCLCISFNNNDKPTNLAATTAHPLSSSALQSHKGLGLWEKKESSSQTSAVRHLTGSLTSAEGLRFAIVVARFNEIVTRPLLEGALDTFKRYSVKEEDIDVVWVPGSFEIGLVAEKLGKSRKYQAVLCIGAVIRGDTSHYDAVANSAASGVLSAGLSSGVPCIFGVLTCDDMDQALNRAGGKAGNKGSETALTAILPIAETGATRLLCSHAKNIELLHLKDKRQF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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