当前解析结果
SmilChr01G003736| 统一新 Gene ID | SmilChr01G003736 |
|---|---|
| 名称 | SmilChr01G003736 |
| 描述 | fatty acyl-CoA reductase 2, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 55671833 - 55675978 / + |
| NCBI Gene ID | LOC130995797 |
|---|---|
| GeneID | 130995797 |
| locus_tag | - |
| NCBI Name | LOC130995797 |
| 原始查询 | SmilChr01G003736 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fatty acyl-CoA reductase 2, chloroplastic-like |
| 产物 | fatty acyl-CoA reductase 2%2C chloroplastic-like |
| Arabidopsis | AT3G11980 (MS2)Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:820372] identity=41.7; qcov=0.939; evalue=7.17e-128; confidence=medium |
| Rice | Os03g0167600 (OsMS2)- identity=39; qcov=0.924; evalue=1.03e-119; confidence=medium |
| GO | GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF03015 (Sterile); PF07993 (NAD_binding_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057777211.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057777211.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777211.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777211.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777211.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:55671885 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | A19,B102,B38,B39,C13 |
Chr1:55671885 |
AG |
A |
1bp_deletion | CDS_variant | 5 | A19,B102,B38,B39,C13 |
Chr1:55671887 |
CTG |
C |
2bp_deletion | frameshift_variant | 5 | A19,B102,B38,B39,C13 |
Chr1:55671887 |
CTG |
C |
2bp_deletion | CDS_variant | 5 | A19,B102,B38,B39,C13 |
Chr1:55672045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr1:55674100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:55674652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:55674767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C21 |
Chr1:55674785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C36,D3 |
Chr1:55674831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,D4 |
Chr1:55674838 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B83,C36,C59 |
Chr1:55674857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777211.1PF02719
Polysacc_synt_2 87-232 aa
PF01370
Epimerase 87-238 aa
PF07993
NAD_binding_4 89-377 aa
PF03015
Sterile 469-538 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777211.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 87 | 232 | 0.00018 | 21.5 | Polysaccharide biosynthesis protein |
XP_057777211.1 |
Pfam | PF01370 |
Epimerase | Family | 87 | 238 | 4.3e-07 | 30.3 | NAD dependent epimerase/dehydratase family |
XP_057777211.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 89 | 377 | 1.5e-68 | 231.5 | Male sterility protein |
XP_057777211.1 |
Pfam | PF03015 |
Sterile | Family | 469 | 538 | 6.6e-13 | 49.3 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。