Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003743`

染色体: Chr01 坐标: 55735122-55758638 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003743`
名称	SmilChr01G003743
描述	arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55735122 - 55758638 / `+`

ID 对照

NCBI Gene ID	`LOC130996700`
GeneID	`130996700`
locus_tag	`-`
NCBI Name	`LOC130996700`
原始查询	`SmilChr01G003743`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like
产物	arogenate dehydratase/prephenate dehydratase 1%2C chloroplastic-like
Arabidopsis	`AT1G11790` (ADT1) arogenate dehydratase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837725] identity=55.2; qcov=0.869; evalue=7.63e-108; confidence=high
Rice	`Os04g0406600` - identity=49.8; qcov=0.878; evalue=2.78e-93; confidence=high
GO	GO:0004106 (chorismate mutase activity); GO:0004664 (prephenate dehydratase activity); GO:0005737 (cytoplasm); GO:0009094 (L-phenylalanine biosynthetic process); GO:0009507 (chloroplast); GO:0047769 (arogenate dehydratase activity)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00800 (PDT)
InterPro	-
eggNOG	-
NR	GeneID:130996700

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057777990.1`
2	Cytosol	细胞质基质	0.20000	`XP_057777990.1`
3	Chloroplast	叶绿体	0.20000	`XP_057777990.1`
4	Nucleus	细胞核	0.00000	`XP_057777990.1`
5	Chromosome	染色体	0.00000	`XP_057777990.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55735238`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C29
`Chr1:55735238`	`TC`	`T`	1bp_deletion	CDS_variant	1	C29
`Chr1:55735304`	`AT`	`A`	1bp_deletion	frameshift_variant	159	A13,A14,A15,A18,A2,A21,A24,A3,A4,A5,A6,A7,A8,A9,B100,B101,B104,B106,B107,B108,B11,B110,B111,B117,B119,B120,B122,B123,B125,B129,B130,B131,B132,B137,B138,B139,B140,B15,B16,B17,B18,B19,B2,B21,B23,B25,B26,B27,B28,B29,B3,B30,B31,B33,B34,B35,B37,B38,B39,B40,B42,B43,B45,B46,B47,B5,B51,B52,B54,B55,B58,B59,B60,B62,B63,B64,B66,B67,B68,B69,B71,B72,B73,B74,B76,B77,B80,B81,B83,B84,B86,B87,B88,B89,B90,B91,B92,B94,B99,C1,C10,C11,C14,C16,C17,C19,C21,C22,C24,C29,C30,C31,C34,C35,C38,C4,C40,C42,C45,C46,C47,C50,C52,C54,C55,C56,C57,C6,C61,C63,C64,C66,C69,C7,C71,C72,C73,C74,C75,C77,C79,C8,C80,C81,C82,C83,C85,C86,C87,C9,D1,D11,D3,D4,D5,D6,D7,D8,D9
`Chr1:55735450`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D5
`Chr1:55735450`	`TG`	`T`	1bp_deletion	CDS_variant	1	D5
`Chr1:55735476`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C14
`Chr1:55735476`	`AC`	`A`	1bp_deletion	CDS_variant	1	C14
`Chr1:55735504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr1:55736794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr1:55750122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C37,C42
`Chr1:55757323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B41,B94,C53
`Chr1:55757356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,B78,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777990.1

329 aa

164

329

PDT

PF00800 PDT 48-223 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777990.1`	Pfam	`PF00800`	PDT	Family	48	223	3e-53	181.0	Prephenate dehydratase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922007.1
TTTTTTTTGCTTACACGATATAAACAGGAGGGTTTACAATCAAAATTTCCGAAAAGCAAAATTATCCGTCAAATTGCATTGCATTCTCACCAATCATGATGCTCTCTCAAAGCGCTTCAACTAAAATTCCGGTACTAAGCCAAATTTATTCCCCAAAACTTACCAATTTCATTTCGGCTACAATAATGCCTCGTCATCATGATCTCCAAAACCATCATATCATTTCAAAGCTTCGTATCGCCTACCAGGGTGTTCCAGGA...

CDS

1 records

下载 CDS FASTA

LOC130996700
ATGATGCTCTCTCAAAGCGCTTCAACTAAAATTCCGGTACTAAGCCAAATTTATTCCCCAAAACTTACCAATTTCATTTCGGCTACAATAATGCCTCGTCATCATGATCTCCAAAACCATCATATCATTTCAAAGCTTCGTATCGCCTACCAGGGTGTTCCAGGAGCATATGGGGAGGCTGCGGCGCTTAAAGCATACCCGAATTGCGAGACACTCCAGTGCCAGCACTTTCAGGATGCCATACAAGCGGTGGAAAGGGG...

Protein

1 records

下载 Protein FASTA

XP_057777990.1
MMLSQSASTKIPVLSQIYSPKLTNFISATIMPRHHDLQNHHIISKLRIAYQGVPGAYGEAAALKAYPNCETLQCQHFQDAIQAVERGWAEEAVIPIENSIVGSVHTNYDLLLRHTLHVVGETHLFVDHCLLALPAAAKHHLTSVFSHPQALLQCQMSLNMLGVAAIPTHNTGVAAQIVASRGVQENGAIASARAAQLYGLNILDHKFQDRSNNITRFLKLAREPLLPATNTRSKTSISFIPDELHKALSVFAQTGIHISK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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