Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003752`

染色体: Chr01 坐标: 55901459-55906911 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003752`
名称	SmilChr01G003752
描述	fatty acyl-CoA reductase 2, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55901459 - 55906911 / `+`

ID 对照

NCBI Gene ID	`LOC130995788`
GeneID	`130995788`
locus_tag	`-`
NCBI Name	`LOC130995788`
原始查询	`SmilChr01G003752`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fatty acyl-CoA reductase 2, chloroplastic-like
产物	fatty acyl-CoA reductase 2%2C chloroplastic-like
Arabidopsis	`AT3G11980` (MS2) Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:820372] identity=41.9; qcov=0.908; evalue=1e-126; confidence=medium
Rice	`Os03g0167600` (OsMS2) - identity=37.2; qcov=0.923; evalue=1.66e-120; confidence=medium
GO	GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4)
InterPro	-
eggNOG	-
NR	GeneID:130995788

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057777197.1`
2	Mitochondrion	线粒体	0.20000	`XP_057777197.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057777197.1`
4	Nucleus	细胞核	0.00000	`XP_057777197.1`
5	Chromosome	染色体	0.00000	`XP_057777197.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55903370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B63,B83,C10
`Chr1:55903686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,A4
`Chr1:55905663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:55905676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:55905722`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B4,B55,B57
`Chr1:55905956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,C36,D3
`Chr1:55906441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B16,B5
`Chr1:55906535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr1:55906724`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B2,B64
`Chr1:55906724`	`AT`	`A`	1bp_deletion	CDS_variant	2	B2,B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777197.1

542 aa

271

542

Epimerase

NAD_binding_4

Sterile

PF01370 Epimerase 92-247 aa PF07993 NAD_binding_4 94-382 aa PF03015 Sterile 471-537 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777197.1`	Pfam	`PF01370`	Epimerase	Family	92	247	2.2e-07	31.2	NAD dependent epimerase/dehydratase family
`XP_057777197.1`	Pfam	`PF07993`	NAD_binding_4	Family	94	382	7e-71	239.1	Male sterility protein
`XP_057777197.1`	Pfam	`PF03015`	Sterile	Family	471	537	2.7e-12	47.4	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921214.1
CGTAATACCATACACTCTCAAAATTAAACTTAATAGTTTTGGTTTTGAGAGTTTAGAGCTAAGTAAACATAATGTTTTTGGGTGCAGCTGCTACCTCATTGTTCTATCCTCCAATCAAACCTTCTTTTGTTACGAAATATTTCACCAAAACAAACCTGCACTTTGCTGCAAATCATCCTACTAAAATGAGTGCTATTAGTCGGAAAAATGAGCAAACACATTCCTTCTTCACTTCTTGCTGCCACCCACCGACGTCGGAA...

CDS

1 records

下载 CDS FASTA

LOC130995788
ATGTTTTTGGGTGCAGCTGCTACCTCATTGTTCTATCCTCCAATCAAACCTTCTTTTGTTACGAAATATTTCACCAAAACAAACCTGCACTTTGCTGCAAATCATCCTACTAAAATGAGTGCTATTAGTCGGAAAAATGAGCAAACACATTCCTTCTTCACTTCTTGCTGCCACCCACCGACGTCGGAACTCAAAGCAGCGGCGGCGGCGGCGGTTGATTCTCAAGATGGGCACACAGGAATAGGTATCCTTGAATTTTT...

Protein

1 records

下载 Protein FASTA

XP_057777197.1
MFLGAAATSLFYPPIKPSFVTKYFTKTNLHFAANHPTKMSAISRKNEQTHSFFTSCCHPPTSELKAAAAAAVDSQDGHTGIGILEFFQGKNIFVTGATGLLGKVVVEKLLRSTSMGKIYLLVKAKDKEAAFDRLQSEIISSELFASVKEKYGTSYIGLVKEKLIPIVGDICKPNMGMDSESIDAVRKDVHVIIHSAASTTFNERYDLLVDSNVIAPQRLMRFAKTCNKLQLFTHISTAYVNERREGIISEESMIMGGDDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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