当前解析结果
SmilChr01G003761| 统一新 Gene ID | SmilChr01G003761 |
|---|---|
| 名称 | SmilChr01G003761 |
| 描述 | type I inositol polyphosphate 5-phosphatase 13-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56004505 - 56010545 / + |
| NCBI Gene ID | LOC130995649 |
|---|---|
| GeneID | 130995649 |
| locus_tag | - |
| NCBI Name | LOC130995649 |
| 原始查询 | SmilChr01G003761 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | type I inositol polyphosphate 5-phosphatase 13-like |
| 产物 | type I inositol polyphosphate 5-phosphatase 13-like |
| Arabidopsis | AT2G43900 (5PTase12)Endonuclease/exonuclease/phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818994] identity=63.2; qcov=0.919; evalue=0; confidence=high |
| Rice | Os08g0524100- identity=55.9; qcov=0.833; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0016791 (phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation) |
| KEGG | - |
| Pfam | PF22669 (Exo_endo_phos2); PF23754 (Beta-prop_IP5PC_F); PF23755 (Ig-like_IP5PC_F) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057777004.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057777004.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057777004.1 |
| 4 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057777010.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057777004.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56004923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr1:56004945 |
AG |
A |
1bp_deletion | frameshift_variant | 22 | A13,A22,A24,A4,A6,B122,B127,B15,B33,B35,B49,B77,C12,C14,C21,C46,C6,C72,C74,C79,C83,C86 |
Chr1:56004962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:56005119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr1:56005125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:56005344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr1:56005505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr1:56005645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr1:56005713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B114,C35 |
Chr1:56005794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B5,C40 |
Chr1:56006039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B36,B5,C40 |
Chr1:56006081 |
GCT |
G |
2bp_deletion | frameshift_variant | 2 | B81,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777004.1PF23754
Beta-prop_IP5PC_F 255-646 aa
PF22669
Exo_endo_phos2 680-1018 aa
PF23755
Ig-like_IP5PC_F 1057-1192 aa
XP_057777010.1PF23754
Beta-prop_IP5PC_F 255-646 aa
PF22669
Exo_endo_phos2 680-1014 aa
PF23755
Ig-like_IP5PC_F 1053-1188 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777004.1 |
Pfam | PF23754 |
Beta-prop_IP5PC_F | Repeat | 255 | 646 | 4.6e-218 | 724.5 | IP5P C-F beta-propeller |
XP_057777004.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 680 | 1018 | 2.2e-67 | 228.3 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057777004.1 |
Pfam | PF23755 |
Ig-like_IP5PC_F | Domain | 1057 | 1192 | 3e-62 | 209.1 | IP5P C-F Ig-like domain |
XP_057777010.1 |
Pfam | PF23754 |
Beta-prop_IP5PC_F | Repeat | 255 | 646 | 4.6e-218 | 724.5 | IP5P C-F beta-propeller |
XP_057777010.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 680 | 1014 | 1.9e-67 | 228.5 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057777010.1 |
Pfam | PF23755 |
Ig-like_IP5PC_F | Domain | 1053 | 1188 | 3e-62 | 209.1 | IP5P C-F Ig-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。