当前解析结果
SmilChr01G003768| 统一新 Gene ID | SmilChr01G003768 |
|---|---|
| 名称 | SmilChr01G003768 |
| 描述 | polygalacturonase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56045957 - 56047568 / - |
| NCBI Gene ID | LOC131010387 |
|---|---|
| GeneID | 131010387 |
| locus_tag | - |
| NCBI Name | LOC131010387 |
| 原始查询 | SmilChr01G003768 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polygalacturonase-like |
| 产物 | polygalacturonase-like |
| Arabidopsis | AT3G59850 (AT3G59850)Pectin lyase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825155] identity=60; qcov=0.922; evalue=1.4e-167; confidence=high |
| Rice | Os01g0623600 (OsPGL32)- identity=49.6; qcov=0.987; evalue=3.12e-134; confidence=high |
| GO | GO:0004650 (polygalacturonase activity); GO:0005975 (carbohydrate metabolic process) |
| KEGG | smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00295 (Glyco_hydro_28); PF12708 (Pect-lyase_RHGA_epim) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010387 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057793874.1 |
| 2 | Cell wall | 细胞壁 | 0.60000 | XP_057793874.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793874.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793874.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793874.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56046011 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B1,B7,C30 |
Chr1:56046011 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B1,B7,C30 |
Chr1:56046153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C56,C59,C84 |
Chr1:56046605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:56046665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:56046713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,C54 |
Chr1:56047160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr1:56047199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C60 |
Chr1:56047216 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C53 |
Chr1:56047216 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C53 |
Chr1:56047376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,B64 |
Chr1:56047387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793874.1PF12708
Pect-lyase_RHGA_epim 31-268 aa
PF00295
Glyco_hydro_28 57-384 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793874.1 |
Pfam | PF12708 |
Pect-lyase_RHGA_epim | Repeat | 31 | 268 | 3e-14 | 54.0 | Rhamnogalacturonase A/epimerase, pectate lyase-like |
XP_057793874.1 |
Pfam | PF00295 |
Glyco_hydro_28 | Repeat | 57 | 384 | 1.6e-88 | 297.6 | Glycosyl hydrolases family 28 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。