Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003782`

染色体: Chr01 坐标: 56198461-56201541 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003782`
名称	SmilChr01G003782
描述	putative FBD-associated F-box protein At5g53640
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56198461 - 56201541 / `-`

ID 对照

NCBI Gene ID	`LOC130996153`
GeneID	`130996153`
locus_tag	`-`
NCBI Name	`LOC130996153`
原始查询	`SmilChr01G003782`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative FBD-associated F-box protein At5g53640
产物	putative FBD-associated F-box protein At5g53640
Arabidopsis	`AT4G14103` (AT4G14103) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827048] identity=37.5; qcov=0.31; evalue=2.97e-08; confidence=low
Rice	`Os02g0713500` (OsFbox108) - identity=55.6; qcov=0.131; evalue=1.49e-09; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1)
InterPro	-
eggNOG	-
NR	GeneID:130996153

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777648.1`
2	Chromosome	染色体	0.00000	`XP_057777648.1`
3	Centromere	着丝粒	0.00000	`XP_057777648.1`
4	Chromatin	染色质	0.00000	`XP_057777648.1`
5	Telomere	端粒	0.00000	`XP_057777648.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56198563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C51,C67
`Chr1:56198986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C61
`Chr1:56199024`	`G`	`GTA`	2bp_insertion	frameshift_variant	30	A1,A15,A22,A24,B10,B127,B136,B138,B18,B33,B42,B43,B49,B54,B58,B60,B66,B77,B98,C12,C23,C27,C48,C49,C51,C70,C85,C87,C9,D8
`Chr1:56199053`	`T`	`TA`	1bp_insertion	frameshift_variant	33	A2,A5,A6,A9,B102,B120,B13,B132,B135,B139,B19,B24,B27,B48,B53,B68,B70,B90,B92,B95,B97,C13,C2,C22,C38,C41,C42,C45,C52,C60,C80,D2,D9
`Chr1:56199592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:56199840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr1:56199898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr1:56200037`	`AAT`	`A`	2bp_deletion	frameshift_variant	117	A1,A10,A14,A18,A20,A23,A4,A6,A8,B100,B102,B103,B104,B105,B107,B108,B110,B111,B114,B115,B119,B120,B122,B125,B126,B128,B129,B13,B131,B138,B15,B18,B2,B21,B24,B26,B29,B3,B31,B34,B35,B36,B37,B38,B39,B40,B45,B46,B53,B54,B56,B59,B61,B62,B63,B64,B68,B70,B71,B75,B78,B79,B8,B82,B83,B87,B89,B91,B95,B96,B97,B99,C13,C15,C17,C2,C20,C23,C25,C26,C28,C29,C30,C32,C34,C35,C36,C37,C38,C41,C42,C44,C5,C52,C57,C58,C60,C61,C63,C68,C7,C71,C72,C75,C8,C81,C82,C83,C86,C87,C9,D11,D3,D4,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777648.1

415 aa

208

415

F-box

LRR_At1g61320_AtMIF1

PF00646 F-box 33-66 aa PF23622 LRR_At1g61320_AtMIF1 130-400 aa

XP_057777654.1

415 aa

208

415

F-box

LRR_At1g61320_AtMIF1

PF00646 F-box 33-66 aa PF23622 LRR_At1g61320_AtMIF1 130-400 aa

XP_057777661.1

413 aa

206

413

F-box

LRR_At1g61320_AtMIF1

PF00646 F-box 31-64 aa PF23622 LRR_At1g61320_AtMIF1 128-398 aa

XP_057777668.1

413 aa

206

413

F-box

LRR_At1g61320_AtMIF1

PF00646 F-box 31-64 aa PF23622 LRR_At1g61320_AtMIF1 128-398 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777648.1`	Pfam	`PF00646`	F-box	Domain	33	66	0.00041	20.9	F-box domain
`XP_057777648.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	130	400	1.3e-06	28.8	At1g61320/AtMIF1, LRR domain
`XP_057777654.1`	Pfam	`PF00646`	F-box	Domain	33	66	0.00041	20.9	F-box domain
`XP_057777654.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	130	400	1.3e-06	28.8	At1g61320/AtMIF1, LRR domain
`XP_057777661.1`	Pfam	`PF00646`	F-box	Domain	31	64	0.00041	20.9	F-box domain
`XP_057777661.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	128	398	1.4e-06	28.7	At1g61320/AtMIF1, LRR domain
`XP_057777668.1`	Pfam	`PF00646`	F-box	Domain	31	64	0.00041	20.9	F-box domain
`XP_057777668.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	128	398	1.4e-06	28.7	At1g61320/AtMIF1, LRR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921665.1
TTTACAGTATTATTACTTTATACTAAATCAACCCTAATTATCAGAGATCTCGATAAAAAGCTAATAAAGATTATATCGTCTCTTCCTACCGCGCGAGTTCTTCTGTTCCTCTTTTGGCTCTCACCATATTTTCTCCTGCTCATCCTCTTCAAGGAAAAGTTGTGCGATGAAGAGAGACGTTGCAAAGGAGAGAAGAAGGAAACGGCCTAGATGTATACATAAGTTTCAGGAATTTGAATTGAATATTAAGGATGAAGATA...

XM_057921678.1
TTACAGTATTATTACTTTATACTAAATCAACCCTAATTATCAGAGATCTCGATAAAAAGCTAATAAAGATTATATCGTCTCTTCCTACCGCGCGAGTTCTTCTGTTCCTCTTTTGGCTCTCACCATATTTTCTCCTGCTCATCCTCTTCAAGGAAAAGTTGTGCGATGAAGAGAGACGTTGCAAAGGAGAGAAGAAGGAAACGGCCTAGATGTATACATAAGGAATTTGAATTGAATATTAAGGATGAAGATAGAATTAG...

CDS

4 records

下载 CDS FASTA

LOC130996153
ATGAAGAGAGACGTTGCAAAGGAGAGAAGAAGGAAACGGCCTAGATGTATACATAAGGAATTTGAATTGAATATTAAGGATGAAGATAGAATTAGTGAATTGGAGGACGATATTCTTGTATCCATAATTTCAAAATTGGAACTGAAAGAAGCTATGGCCACTAGCCTGCTGTCGTCTCGTTGGCGGTATCTCCCCACACGCATCACCCACCTAGCTTTATGCGTATTTAATCCGAAATTGAAACCTTCGGAGGAAATTAT...

Protein

4 records

下载 Protein FASTA

XP_057777648.1
MKRDVAKERRRKRPRCIHKFQEFELNIKDEDRISELEDDILVSIISKLELKEAMATSLLSSRWRYLPTRITHLALCVFNPKLKPSEEIIDKWFDFVLAKRVEVLKIHTGLHRPFYKLSDLIGKKPLRPGLNFLKELSLSAVDLDDAEFELLLTTFPLLETLSIDSFKNLRNVKIVDNLFRLKHLSLRGLELGSLEIGNAMNLVSLKCYIRIDNLVKLYNVPKLIELATDHRGFAGNLLIQILSTSPSCILAQLRVLRVST...

XP_057777654.1
MKRDVAKERRRKRPRCIHKFQEFELNIKDEDRISELEDDILVSIISKLELKEAMATSLLSSRWRYLPTRITHLALCVFNPKLKPSEEIIDKWFDFVLAKRVEVLKIHTGLHRPFYKLSDLIGKKPLRPGLNFLKELSLSAVDLDDAEFELLLTTFPLLETLSIDSFKNLRNVKIVDNLFRLKHLSLRGLELGSLEIGNAMNLVSLKCYIRIDNLVKLYNVPKLIELATDHRGFAGNLLIQILSTSPSCILAQLRVLRVST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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