Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003792`

染色体: Chr01 坐标: 56324576-56332760 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003792`
名称	SmilChr01G003792
描述	cysteine synthase, chloroplastic/chromoplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56324576 - 56332760 / `+`

ID 对照

NCBI Gene ID	`LOC130996255`
GeneID	`130996255`
locus_tag	`-`
NCBI Name	`LOC130996255`
原始查询	`SmilChr01G003792`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine synthase, chloroplastic/chromoplastic
产物	cysteine synthase%2C chloroplastic/chromoplastic
Arabidopsis	`AT2G43750` (OASB) O-acetylserine (thiol) lyase B [Source:NCBI gene (formerly Entrezgene);Acc:818978] identity=78.1; qcov=0.909; evalue=0; confidence=high
Rice	`Os01g0978100` - identity=81.7; qcov=0.865; evalue=0; confidence=high
GO	GO:0004124 (cysteine synthase activity); GO:0005737 (cytoplasm); GO:0006535 (GO:0006535); GO:0009567 (double fertilization forming a zygote and endosperm); GO:0009860 (pollen tube growth)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage))
Pfam	PF00291 (PALP)
InterPro	-
eggNOG	-
NR	GeneID:130996255

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777746.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057777746.1`
3	Nucleus	细胞核	0.00000	`XP_057777746.1`
4	Chromosome	染色体	0.00000	`XP_057777746.1`
5	Centromere	着丝粒	0.00000	`XP_057777746.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56326624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:56326671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr1:56326750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:56326771`	`G`	`GGT`	2bp_insertion	CDS_variant	2	B108,C23
`Chr1:56327180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr1:56329397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:56329436`	`GCA`	`G`	2bp_deletion	frameshift_variant	1	D11
`Chr1:56329436`	`GCA`	`G`	2bp_deletion	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777746.1

396 aa

198

396

PALP

PF00291 PALP 83-369 aa

XP_057777753.1

396 aa

198

396

PALP

PF00291 PALP 83-369 aa

XP_057777760.1

396 aa

198

396

PALP

PF00291 PALP 83-369 aa

XP_057777768.1

396 aa

198

396

PALP

PF00291 PALP 83-369 aa

XP_057777773.1

396 aa

198

396

PALP

PF00291 PALP 83-369 aa

XP_057777776.1

396 aa

198

396

PALP

PF00291 PALP 83-369 aa

XP_057777785.1

386 aa

193

386

PALP

PF00291 PALP 83-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777746.1`	Pfam	`PF00291`	PALP	Family	83	369	3.8e-74	250.4	Pyridoxal-phosphate dependent enzyme
`XP_057777753.1`	Pfam	`PF00291`	PALP	Family	83	369	3.8e-74	250.4	Pyridoxal-phosphate dependent enzyme
`XP_057777760.1`	Pfam	`PF00291`	PALP	Family	83	369	3.8e-74	250.4	Pyridoxal-phosphate dependent enzyme
`XP_057777768.1`	Pfam	`PF00291`	PALP	Family	83	369	3.8e-74	250.4	Pyridoxal-phosphate dependent enzyme
`XP_057777773.1`	Pfam	`PF00291`	PALP	Family	83	369	3.8e-74	250.4	Pyridoxal-phosphate dependent enzyme
`XP_057777776.1`	Pfam	`PF00291`	PALP	Family	83	369	3.8e-74	250.4	Pyridoxal-phosphate dependent enzyme
`XP_057777785.1`	Pfam	`PF00291`	PALP	Family	83	359	4.8e-69	233.6	Pyridoxal-phosphate dependent enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057921790.1
CGGTATTACCCACAAGGCCACAATAACGGGGCACACTTCAAATATATCCAAAACGACGTTGGAGCGGCCCCCGAGGGATATTTCGTTGACTCGAAGGGATAATAAAATGGCTACAAGCCTACAACCATCTATCGTCGGTGTATCTAGACACACACTCGCACACAATACATACAGTGAGCGTGAGAGGAGGTGGTGGAATGGCTTCGCTCGTGAACAAGCCGCTCGCTTCTCTGTGCACGGTCATCAAGTCGGACAGCCGT...

XM_057921770.1
CGGTATTACCCACAAGGCCACAATAACGGGGCACACTTCAAATATATCCAAAACGACGTTGGAGCGGCCCCCGAGGGATATTTCGTTGACTCGAAGGGATAATAAAATGGCTACAAGCCTACAACCATCTATCGTCGGTGTATCTAGACACACACTCGCACACAATACATACAGTGAGCGTGAGAGGAGGTGGTGGAATGGCTTCGCTCGTGAACAAGCCGCTCGCTTCTCTGTGCACGGTCATCAAGTCGGACAGCCGT...

CDS

7 records

下载 CDS FASTA

LOC130996255
ATGGCTTCGCTCGTGAACAAGCCGCTCGCTTCTCTGTGCACGGTCATCAAGTCGGACAGCCGTTCGCCGGCGTCATTCGTCGCCGAACGCTATCGCGTCGGAGCACCGAAGCTCAGCAACAGCATCAGGATTTCCAGCGGGGGCGTTTTGAGTAGAAAAAATAGCGGCGATGCTAATGGAATCGTGTGTAAAGCAATATCTATGGAGGCGGAGACGGAGATTGAAGGACTCAACATCGCTGAAGATGTTACTCAGCTCAT...

Protein

7 records

下载 Protein FASTA

XP_057777746.1
MASLVNKPLASLCTVIKSDSRSPASFVAERYRVGAPKLSNSIRISSGGVLSRKNSGDANGIVCKAISMEAETEIEGLNIAEDVTQLIGNTPMVYLNNVVKGCVANIAAKLEIMEPCCSVKDRIGFSMVTDAEQKGLITPGKSVLVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDAAKGMKGAVQKAEEIVNSTPNAYMLQQFDNPANPKVHYETTGPEIWEDTKGKVDILVAGIGTGGTI...

XP_057777753.1
MASLVNKPLASLCTVIKSDSRSPASFVAERYRVGAPKLSNSIRISSGGVLSRKNSGDANGIVCKAISMEAETEIEGLNIAEDVTQLIGNTPMVYLNNVVKGCVANIAAKLEIMEPCCSVKDRIGFSMVTDAEQKGLITPGKSVLVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDAAKGMKGAVQKAEEIVNSTPNAYMLQQFDNPANPKVHYETTGPEIWEDTKGKVDILVAGIGTGGTI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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