当前解析结果
SmilChr01G003798| 统一新 Gene ID | SmilChr01G003798 |
|---|---|
| 名称 | SmilChr01G003798 |
| 描述 | protein IQ-DOMAIN 13-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56359032 - 56363713 / - |
| NCBI Gene ID | LOC130995744 |
|---|---|
| GeneID | 130995744 |
| locus_tag | - |
| NCBI Name | LOC130995744 |
| 原始查询 | SmilChr01G003798 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein IQ-DOMAIN 13-like |
| 产物 | protein IQ-DOMAIN 13-like |
| Arabidopsis | AT3G59690 (IQD13)IQ-domain 13 [Source:NCBI gene (formerly Entrezgene);Acc:825138] identity=46; qcov=1.03; evalue=2.52e-142; confidence=high |
| Rice | Os01g0896200- identity=34.6; qcov=0.635; evalue=1.34e-43; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00612 (IQ); PF13178 (DUF4005) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995744 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057777131.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057777131.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057777131.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777131.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777131.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56359288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A5,B124,C61,C78 |
Chr1:56359354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:56359374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr1:56359408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr1:56359462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr1:56359492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C2 |
Chr1:56359646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B5,C26,C40 |
Chr1:56359696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C62 |
Chr1:56359729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr1:56359753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr1:56359760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr1:56359777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777131.1PF00612
IQ 213-231 aa
PF13178
DUF4005 463-556 aa
XP_057777139.1PF00612
IQ 213-231 aa
PF13178
DUF4005 463-556 aa
XP_057777147.1PF00612
IQ 213-231 aa
PF13178
DUF4005 463-556 aa
XP_057777153.1PF00612
IQ 213-231 aa
PF13178
DUF4005 463-556 aa
XP_057777159.1PF00612
IQ 213-231 aa
PF13178
DUF4005 463-556 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777131.1 |
Pfam | PF00612 |
IQ | Motif | 213 | 231 | 1.4e-06 | 28.3 | IQ calmodulin-binding motif |
XP_057777131.1 |
Pfam | PF13178 |
DUF4005 | Family | 463 | 556 | 1.2e-09 | 39.4 | Protein of unknown function (DUF4005) |
XP_057777139.1 |
Pfam | PF00612 |
IQ | Motif | 213 | 231 | 1.4e-06 | 28.3 | IQ calmodulin-binding motif |
XP_057777139.1 |
Pfam | PF13178 |
DUF4005 | Family | 463 | 556 | 1.2e-09 | 39.4 | Protein of unknown function (DUF4005) |
XP_057777147.1 |
Pfam | PF00612 |
IQ | Motif | 213 | 231 | 1.4e-06 | 28.3 | IQ calmodulin-binding motif |
XP_057777147.1 |
Pfam | PF13178 |
DUF4005 | Family | 463 | 556 | 1.2e-09 | 39.4 | Protein of unknown function (DUF4005) |
XP_057777153.1 |
Pfam | PF00612 |
IQ | Motif | 213 | 231 | 1.4e-06 | 28.3 | IQ calmodulin-binding motif |
XP_057777153.1 |
Pfam | PF13178 |
DUF4005 | Family | 463 | 556 | 1.2e-09 | 39.4 | Protein of unknown function (DUF4005) |
XP_057777159.1 |
Pfam | PF00612 |
IQ | Motif | 213 | 231 | 1.4e-06 | 28.3 | IQ calmodulin-binding motif |
XP_057777159.1 |
Pfam | PF13178 |
DUF4005 | Family | 463 | 556 | 1.2e-09 | 39.4 | Protein of unknown function (DUF4005) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。