Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003805`

染色体: Chr01 坐标: 56428079-56443511 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003805`
名称	SmilChr01G003805
描述	uncharacterized SmilChr01G003805
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56428079 - 56443511 / `+`

ID 对照

NCBI Gene ID	`LOC130996012`
GeneID	`130996012`
locus_tag	`-`
NCBI Name	`LOC130996012`
原始查询	`SmilChr01G003805`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0227300; species=rice; confidence=high
产物	hit=Os03g0227300; species=rice; confidence=high
Arabidopsis	`AT3G52050` (AT3G52050) 5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:824368] identity=67.5; qcov=0.85; evalue=2.61e-155; confidence=high
Rice	`Os03g0227300` - identity=65.2; qcov=0.88; evalue=2.31e-162; confidence=high
GO	GO:0003677 (DNA binding); GO:0017108 (5'-flap endonuclease activity); GO:0033567 (DNA replication, Okazaki fragment processing)
KEGG	-
Pfam	PF01367 (5_3_exonuc); PF02739 (5_3_exonuc_N)
InterPro	-
eggNOG	-
NR	GeneID:130996012

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777521.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057777528.1`
3	Mitochondrion	线粒体	0.40000	`XP_057777545.1`
4	Nucleus	细胞核	0.00000	`XP_057777521.1`
5	Chromosome	染色体	0.00000	`XP_057777521.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56428620`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	A14,D1
`Chr1:56428620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,D1
`Chr1:56428677`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	A14,D1
`Chr1:56428677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,D1
`Chr1:56429949`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B103
`Chr1:56429949`	`AC`	`A`	1bp_deletion	CDS_variant	1	B103
`Chr1:56430761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr1:56439069`	`CTA`	`C`	2bp_deletion	frameshift_variant	109	A11,A15,A16,A18,A22,A24,A6,A8,B1,B10,B102,B103,B105,B107,B112,B114,B117,B119,B121,B123,B125,B131,B132,B15,B18,B20,B21,B22,B28,B29,B30,B31,B34,B35,B38,B39,B40,B41,B42,B44,B46,B48,B5,B53,B54,B55,B59,B6,B62,B63,B65,B66,B68,B7,B74,B76,B77,B79,B80,B81,B84,B85,B88,B9,B90,B91,B94,B95,B97,B99,C11,C15,C20,C21,C25,C27,C28,C3,C33,C35,C40,C42,C46,C47,C48,C49,C5,C51,C58,C59,C60,C61,C64,C67,C69,C71,C74,C76,C78,C79,C80,C82,C83,C87,C9,D2,D4,D5,D7
`Chr1:56439230`	`TGA`	`T`	2bp_deletion	frameshift_variant	124	A10,A11,A13,A16,A18,A22,A24,A25,A4,A5,A6,A8,B1,B10,B101,B104,B105,B11,B114,B115,B118,B119,B12,B120,B124,B126,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B140,B15,B20,B21,B22,B26,B27,B3,B30,B31,B33,B34,B35,B36,B37,B39,B41,B46,B49,B5,B51,B52,B53,B55,B58,B61,B62,B64,B65,B67,B69,B72,B73,B75,B77,B8,B81,B84,B89,B90,B91,B92,B94,B95,C10,C14,C15,C16,C2,C20,C23,C25,C26,C3,C30,C32,C33,C35,C39,C4,C42,C45,C46,C48,C5,C51,C52,C53,C54,C58,C60,C62,C63,C68,C70,C71,C72,C74,C76,C8,C80,C82,C83,C87,D10,D4,D9
`Chr1:56439629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B83
`Chr1:56440816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,C36,C72
`Chr1:56440828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,B62,C36,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777521.1

441 aa

220

441

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-401 aa

XP_057777522.1

441 aa

220

441

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-401 aa

XP_057777523.1

441 aa

220

441

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-401 aa

XP_057777528.1

440 aa

220

440

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-302 aa PF01367 5_3_exonuc 305-400 aa

XP_057777532.1

440 aa

220

440

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-302 aa PF01367 5_3_exonuc 305-400 aa

XP_057777539.1

440 aa

220

440

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-302 aa PF01367 5_3_exonuc 305-400 aa

XP_057777545.1

426 aa

213

426

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-364 aa

XP_057777554.1

425 aa

212

425

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-302 aa PF01367 5_3_exonuc 305-363 aa

XP_057777563.1

423 aa

212

423

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 112-285 aa PF01367 5_3_exonuc 288-383 aa

XP_057777571.1

422 aa

211

422

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 112-284 aa PF01367 5_3_exonuc 287-382 aa

XP_057777579.1

422 aa

211

422

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 112-284 aa PF01367 5_3_exonuc 287-382 aa

XP_057777588.1

401 aa

200

401

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777521.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.5e-36	126.3	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777521.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	401	1.8e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057777522.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.5e-36	126.3	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777522.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	401	1.8e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057777523.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.5e-36	126.3	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777523.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	401	1.8e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057777528.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	302	1.7e-38	132.6	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777528.1`	Pfam	`PF01367`	5_3_exonuc	Domain	305	400	1.9e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057777532.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	302	1.7e-38	132.6	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777532.1`	Pfam	`PF01367`	5_3_exonuc	Domain	305	400	1.9e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057777539.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	302	1.7e-38	132.6	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777539.1`	Pfam	`PF01367`	5_3_exonuc	Domain	305	400	1.9e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057777545.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.4e-36	126.4	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777545.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	364	2.1e-18	67.3	5'-3' exonuclease, C-terminal SAM fold
`XP_057777554.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	302	1.6e-38	132.8	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777554.1`	Pfam	`PF01367`	5_3_exonuc	Domain	305	363	2.2e-18	67.3	5'-3' exonuclease, C-terminal SAM fold
`XP_057777563.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	112	285	4.9e-41	140.9	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777563.1`	Pfam	`PF01367`	5_3_exonuc	Domain	288	383	1.7e-26	93.3	5'-3' exonuclease, C-terminal SAM fold
`XP_057777571.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	112	284	5.7e-43	147.2	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777571.1`	Pfam	`PF01367`	5_3_exonuc	Domain	287	382	1.7e-26	93.2	5'-3' exonuclease, C-terminal SAM fold
`XP_057777579.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	112	284	5.7e-43	147.2	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777579.1`	Pfam	`PF01367`	5_3_exonuc	Domain	287	382	1.7e-26	93.2	5'-3' exonuclease, C-terminal SAM fold
`XP_057777588.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.1e-36	126.7	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057777588.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	362	6e-18	65.9	5'-3' exonuclease, C-terminal SAM fold

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA

XR_009092379.1
ATCAAGTAATCGGAGTTTGGATGCTCTTATATTTTGATGTTCATTTTGTAAACAAAATTGAGATAATTTTGTCAGAAAATAAGAACAGACCGGCGCAGTCCATCTTTTCTCCTCACCCTCCTCACCTCCCCGCCGATAGCCACCGCCTGTGCCCGTTTATTTTCCCTTTCTGACTAATCCAGTCGGCGTGCCGCAGCCACCCTTACTCTCCTCAGGCCGCCGCTGAGTGACTGCGGGCCGCGTCCAAAGCCACCTCTCTA...

XR_009092378.1
ATCAAGTAATCGGAGTTTGGATGCTCTTATATTTTGATGTTCATTTTGTAAACAAAATTGAGATAATTTTGTCAGAAAATAAGAACAGACCGGCGCAGTCCATCTTTTCTCCTCACCCTCCTCACCTCCCCGCCGATAGCCACCGCCTGTGCCCGTTTATTTTCCCTTTCTGACTAATCCAGTCGGCGTGCCGCAGCCACCCTTACTCTCCTCAGGCCGCCGCTGAGTGACTGCGGGCCGCGTCCAAAGCCACCTCTCTA...

CDS

12 records

下载 CDS FASTA

LOC130996012
ATGGCTTGCTTTCAAATTCCGCACCAACAACTTCATATTTTCTGGAGGACGTCTTATTGCTGCGGGAGGAGTCTCTCTGTGAAACAGAAGTTAGGCCACAAATTGACGTCTAGTGGAGATTCAGGAAGGTCATATTCACGCCTTCTTTTTAAAAAGGACTCATGCAAAGTGAGACCTAGTTTGAGTTCTGGATTTTGTAAAGTTCTGCAACCTATCTGTTTGAGAGGTGTCAGTACAGCTGCTCAAAACGCAACGCTTAG...

Protein

12 records

下载 Protein FASTA

XP_057777521.1
MACFQIPHQQLHIFWRTSYCCGRSLSVKQKLGHKLTSSGDSGRSYSRLLFKKDSCKVRPSLSSGFCKVLQPICLRGVSTAAQNATLSQSTLLDTAPREDGSTAALNPSNGRVMLIDGTSIMYRAYYKLIAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEYIPSHVAVVFDHDGVPYGHASLSSKQSFVGKGINFRHTLYPSYKSNRPPTPDTVVQGLQYLKASLKAMSIKVIEQVPGVEADDVIGTLAVKSVNDGFK...

XP_057777522.1
MACFQIPHQQLHIFWRTSYCCGRSLSVKQKLGHKLTSSGDSGRSYSRLLFKKDSCKVRPSLSSGFCKVLQPICLRGVSTAAQNATLSQSTLLDTAPREDGSTAALNPSNGRVMLIDGTSIMYRAYYKLIAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEYIPSHVAVVFDHDGVPYGHASLSSKQSFVGKGINFRHTLYPSYKSNRPPTPDTVVQGLQYLKASLKAMSIKVIEQVPGVEADDVIGTLAVKSVNDGFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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