Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003806`

染色体: Chr01 坐标: 56446152-56448074 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003806`
名称	SmilChr01G003806
描述	protein RETICULATA-RELATED 3, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56446152 - 56448074 / `-`

ID 对照

NCBI Gene ID	`LOC130996419`
GeneID	`130996419`
locus_tag	`-`
NCBI Name	`LOC130996419`
原始查询	`SmilChr01G003806`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RETICULATA-RELATED 3, chloroplastic-like
产物	protein RETICULATA-RELATED 3%2C chloroplastic-like
Arabidopsis	`AT3G08640` (AT3G08640) alphavirus core family protein (DUF3411) [Source:NCBI gene (formerly Entrezgene);Acc:820011] identity=71.3; qcov=0.709; evalue=1.08e-129; confidence=high
Rice	`Os01g0812900` - identity=71.2; qcov=0.67; evalue=1.42e-117; confidence=high
GO	-
KEGG	-
Pfam	PF11891 (RETICULATA-like)
InterPro	-
eggNOG	-
NR	GeneID:130996419

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777798.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057777798.1`
3	Nucleus	细胞核	0.00000	`XP_057777798.1`
4	Chromosome	染色体	0.00000	`XP_057777798.1`
5	Centromere	着丝粒	0.00000	`XP_057777798.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56446478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B79,C39,D1
`Chr1:56446686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B59,B73,C37,D7
`Chr1:56446756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:56446838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B39,B4,B63,B70,B83
`Chr1:56446858`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	B72
`Chr1:56446858`	`GCC`	`G`	2bp_deletion	CDS_variant	1	B72
`Chr1:56446863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr1:56447078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,D7
`Chr1:56447163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,C22,C63,C67
`Chr1:56447362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777798.1

358 aa

179

358

RETICULATA-like

PF11891 RETICULATA-like 119-286 aa

XP_057777799.1

358 aa

179

358

RETICULATA-like

PF11891 RETICULATA-like 119-286 aa

XP_057777800.1

358 aa

179

358

RETICULATA-like

PF11891 RETICULATA-like 119-286 aa

XP_057777801.1

358 aa

179

358

RETICULATA-like

PF11891 RETICULATA-like 119-286 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777798.1`	Pfam	`PF11891`	RETICULATA-like	Family	119	286	4.3e-64	216.2	Protein RETICULATA-related
`XP_057777799.1`	Pfam	`PF11891`	RETICULATA-like	Family	119	286	4.3e-64	216.2	Protein RETICULATA-related
`XP_057777800.1`	Pfam	`PF11891`	RETICULATA-like	Family	119	286	4.3e-64	216.2	Protein RETICULATA-related
`XP_057777801.1`	Pfam	`PF11891`	RETICULATA-like	Family	119	286	4.3e-64	216.2	Protein RETICULATA-related

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921817.1
CAAAAGGCCCTCCTCTCTTAAATTGAGAGGGCAAAATTAGGTGAGAGGGCCCAAGAGTCGCCGGCTGCTATATAAATACGTCCCACCAACTCCCCTCTTTAATTCTCTCACCCCTCTCTCAAGAAGTGATGCAGTATACACCTCTACAACCTTAATAGATGAATCGATTTTGGGGTTAGACGAGTGATCTCCTTGATCAGTTTAGCAGTTTTTTAAGTGAGAATAGATGGCGGCGATGGCTCAGCTTCGCTTCTCCCCAC...

XM_057921815.1
AATACGTCCCACCAACTCCCCTCTTTAATTCTCTCACCCCTCTCTCAAGAAGTGATGCAGTATACACCTCTACAACCTTAATAGATGGTTACACTCATATAATTTCTTAATTTCCCTATTTCCCATTTTTTCGCAAGTAGAACCTTATTTTTTTGACGATTTTTTACTTAAGAATCGATTTTGGGGTTAGACGAGTGATCTCCTTGATCAGTTTAGCAGTTTTTTAAGTGAGAATAGATGGCGGCGATGGCTCAGCTTCG...

CDS

4 records

下载 CDS FASTA

LOC130996419
ATGGCGGCGATGGCTCAGCTTCGCTTCTCCCCACTTGCGTGCCACTACAGCCGCCCCAGCGGTGGTCGCGAGTTTGCCAGTTTTTCCCCAATATTCGCCGATAAGACTTCCGCGAGTTCTGTCTCCTTTCCCTCATTGAAATGCAGTGGAAATTTAATGGGGAGTCTTGATCTACAAAGTAAATTTCAATTACCATGTGCTGGAGGCGGTGGAGATATTGGCGTTGGACGAGGTAGTGGTGGAGATGATGGTGGAAATAG...

Protein

4 records

下载 Protein FASTA

XP_057777798.1
MAAMAQLRFSPLACHYSRPSGGREFASFSPIFADKTSASSVSFPSLKCSGNLMGSLDLQSKFQLPCAGGGGDIGVGRGSGGDDGGNRGWNGGGGDSDESKSSSDSFGPIGAFLNGWRSRVAADPQFPFKVLMEELVGVSACCLGDMASRPNFGLNELDFVFSTLVVGSIMNFVLMYLLAPTMSSASISLPGIFASSPTSHMFEPGAYSVLSRLGTFVYKGTVFAAVGFAAGLVGTALSNGLIKMRKKMDPSFETPNKAPP...

XP_057777799.1
MAAMAQLRFSPLACHYSRPSGGREFASFSPIFADKTSASSVSFPSLKCSGNLMGSLDLQSKFQLPCAGGGGDIGVGRGSGGDDGGNRGWNGGGGDSDESKSSSDSFGPIGAFLNGWRSRVAADPQFPFKVLMEELVGVSACCLGDMASRPNFGLNELDFVFSTLVVGSIMNFVLMYLLAPTMSSASISLPGIFASSPTSHMFEPGAYSVLSRLGTFVYKGTVFAAVGFAAGLVGTALSNGLIKMRKKMDPSFETPNKAPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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