Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003809`

染色体: Chr01 坐标: 56461262-56463273 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003809`
名称	SmilChr01G003809
描述	uncharacterized SmilChr01G003809
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56461262 - 56463273 / `-`

ID 对照

NCBI Gene ID	`LOC130996650`
GeneID	`130996650`
locus_tag	`-`
NCBI Name	`LOC130996650`
原始查询	`SmilChr01G003809`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002]; symbol=AT3G17380; hit=AT3G17380; species=arabidopsis; confidence=low
产物	TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002]; symbol=AT3G17380; hit=AT3G17380; species=arabidopsis; confidence=low
Arabidopsis	`AT3G17380` (AT3G17380) TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002] identity=34.5; qcov=0.965; evalue=1.48e-60; confidence=low
Rice	`Os12g0489100` (OsM13) - identity=32.2; qcov=0.371; evalue=1.97e-13; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00917 (MATH); PF22486 (MATH_2)
InterPro	-
eggNOG	-
NR	GeneID:130996650

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057777930.1`
2	Cytoplasm	细胞质	0.60000	`XP_057777930.1`
3	Cytosol	细胞质基质	0.40000	`XP_057777930.1`
4	Chromosome	染色体	0.00000	`XP_057777930.1`
5	Centromere	着丝粒	0.00000	`XP_057777930.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56461417`	`T`	`TCG`	2bp_insertion	frameshift_variant	1	A4
`Chr1:56461417`	`T`	`TCG`	2bp_insertion	CDS_variant	1	A4
`Chr1:56461460`	`AAC`	`A`	2bp_deletion	frameshift_variant	2	B61,D3
`Chr1:56461460`	`AAC`	`A`	2bp_deletion	CDS_variant	2	B61,D3
`Chr1:56461463`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B106,B11
`Chr1:56461463`	`AG`	`A`	1bp_deletion	CDS_variant	2	B106,B11
`Chr1:56461472`	`CA`	`C`	1bp_deletion	frameshift_variant	2	B106,B11
`Chr1:56461472`	`CA`	`C`	1bp_deletion	CDS_variant	2	B106,B11
`Chr1:56461475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,B11
`Chr1:56461478`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B106,B11
`Chr1:56461478`	`AG`	`A`	1bp_deletion	CDS_variant	2	B106,B11
`Chr1:56461481`	`C`	`CAG`	2bp_insertion	frameshift_variant	2	B106,B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777930.1

310 aa

155

310

MATH_2

MATH

MATH_2

MATH

PF22486 MATH_2 26-152 aa PF00917 MATH 34-154 aa PF22486 MATH_2 175-296 aa PF00917 MATH 180-297 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777930.1`	Pfam	`PF22486`	MATH_2	Domain	26	152	3.3e-54	183.5	MATH domain
`XP_057777930.1`	Pfam	`PF00917`	MATH	Domain	34	154	4.7e-23	82.3	MATH domain
`XP_057777930.1`	Pfam	`PF22486`	MATH_2	Domain	175	296	3.3e-54	183.5	MATH domain
`XP_057777930.1`	Pfam	`PF00917`	MATH	Domain	180	297	4.7e-23	82.3	MATH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921947.1
CCATATATACCATCATTTCGTTGCAACTCTGAACACATTTAATTGCATCACATACACAAAATTAACACAATTTAGGAAGACGAGGAGTGAGAGTGACGATTGGTATGATAGATTGAACCCCATCTCGGTATATTTAATCTACCCAATTAGTTCCTAAGTTCAAAGAACAAAACTCGAATCAAGATCTTCTTCCAATTAACAACAATGGGCGGTGATTCTGCTTCCAGCGGATGTGAAGGATTTCTGGAGGAAACGAGAGA...

CDS

1 records

下载 CDS FASTA

LOC130996650
ATGGGCGGTGATTCTGCTTCCAGCGGATGTGAAGGATTTCTGGAGGAAACGAGAGAGGCTTCTCCGGCGAACTTGCTAATCAAAGTTGAATCTTTTTCTTCATTCTCTGTTAATCATGGGCTTGGCAACTACGAATCGAGGGCTTTCGAAGCCGGTGGCTATAAATGGAAGCTTATAATCTTTCCAGAGGGTAAAGATGAAGGCTGCCACGTTTCTGTTCACTTGTGTATTGCAGAAACCAGTTGTTTGGCTGTGGGGTG...

Protein

1 records

下载 Protein FASTA

XP_057777930.1
MGGDSASSGCEGFLEETREASPANLLIKVESFSSFSVNHGLGNYESRAFEAGGYKWKLIIFPEGKDEGCHVSVHLCIAETSCLAVGWEINVIFAFFVYNHRMENYLCFRGTTRRFNAVVPKLGFSKLISKKSLMDPSKGFVVDDSCVFGAEVFVIKPQRINECLSLVKLTAPTIHEWKISGFSKLINNSWTSEEFVVGNYKWNVTLYSKGDAKANGKYISIFLSCNDSNSFAPNHRLKAEICLRIKTKLGLNHTKNFSHW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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