Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003831`

染色体: Chr01 坐标: 56637261-56640244 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003831`
名称	SmilChr01G003831
描述	transcription factor RF2a-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56637261 - 56640244 / `-`

ID 对照

NCBI Gene ID	`LOC130996350`
GeneID	`130996350`
locus_tag	`-`
NCBI Name	`LOC130996350`
原始查询	`SmilChr01G003831`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor RF2a-like
产物	transcription factor RF2a-like
Arabidopsis	`AT1G06070` (AT1G06070) Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:837116] identity=61.8; qcov=0.852; evalue=1.09e-63; confidence=high
Rice	`Os09g0516200` (RF2a) - identity=67.3; qcov=0.703; evalue=2.36e-58; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF07716 (bZIP_2)
InterPro	-
eggNOG	-
NR	GeneID:130996350

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777793.1`
2	Chromosome	染色体	0.00000	`XP_057777793.1`
3	Centromere	着丝粒	0.00000	`XP_057777793.1`
4	Chromatin	染色质	0.00000	`XP_057777793.1`
5	Telomere	端粒	0.00000	`XP_057777793.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56637512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:56637520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C45
`Chr1:56637684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C44
`Chr1:56637689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,B11
`Chr1:56638456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr1:56639513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr1:56639522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B61,D3
`Chr1:56639549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,C56
`Chr1:56639614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr1:56640161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777793.1

375 aa

188

375

bZIP_2

PF07716 bZIP_2 231-271 aa

XP_057777794.1

335 aa

168

335

bZIP_2

PF07716 bZIP_2 191-231 aa

XP_057777795.1

209 aa

104

209

bZIP_2

PF07716 bZIP_2 65-105 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777793.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	231	271	4.9e-06	27.2	Basic region leucine zipper
`XP_057777794.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	191	231	4.2e-06	27.4	Basic region leucine zipper
`XP_057777795.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	65	105	2e-06	28.4	Basic region leucine zipper

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057921810.1
TTCCTTCCATTTCACAGATTCGTCTCTCTCTCTTTGCGTGTGTGCATATGTGAATATTTGCATGTATTTACATGTGCATGCACCCACCATCTCTTTCAAGCTACGATTATCGCTCCGATCGTCAGATGCGATTACCTTTTCGACTCAAAAATCGAATTTCGTCAGCGATAGAAGAAAAGACAGTAACAGTTTTTCTAAAAAATCTTAGGAGTTGGCTTCCTCCGTTGGGGAGATCCTCAGTTAGTAGCTATAACACAAAG...

XM_057921812.1
ATTTACATGTGCATGCACCCACCATCTCTTTCAAGCTACGATTATCGCTCCGATCGTCAGATGCGATTACCTTTTCGACTCAAAAATCGAATTTCGTCAGCGATAGAAGAAAAGACAGTAACAGTTTTTCTAAAAAATCTGCATTGTAGGTGGATCGGATGGACTTTCTGTTTTTGATGACACTGAAGAGGATCTGCTGCCAGAGTATTTTGTTTTGGATAAGTCCAATTTGATATCTGAGACAATGGAAGAACTGTCTA...

CDS

3 records

下载 CDS FASTA

LOC130996350
ATGTGCATGCACCCACCATCTCTTTCAAGCTACGATTATCGCTCCGATCGTCAGATGCGATTACCTTTTCGACTCAAAAATCGAATTTCGTCAGCGATAGAAGAAAAGACAGTAACAGTTTTTCTAAAAAATCTTAGGAGTTGGCTTCCTCCGTTGGGGAGATCCTCAGTTAGTAGCTATAACACAAAGCCAGAGCAATCAGCATCCTCAAATTTGCGTCCAATAGGGCCGGAATGTTCATTCAAGAAGGAACATAAGAT...

LOC130996350
ATGAATATGAACAGTAGGAGTTGGCTTCCTCCGTTGGGGAGATCCTCAGTTAGTAGCTATAACACAAAGCCAGAGCAATCAGCATCCTCAAATTTGCGTCCAATAGGGCCGGAATGTTCATTCAAGAAGGAACATAAGATGTCATCTCATTCTAGTCAATTTAGTTTCGAGATAAGTCGGATGCCTGAAAATCCCCCGAATAATTTGGCCCATCGACGAACTCATTCTGATGTTCTTGCCCTTCTGAATGATGTTAGCTT...

Protein

3 records

下载 Protein FASTA

XP_057777793.1
MCMHPPSLSSYDYRSDRQMRLPFRLKNRISSAIEEKTVTVFLKNLRSWLPPLGRSSVSSYNTKPEQSASSNLRPIGPECSFKKEHKMSSHSSQFSFEISRMPENPPNNLAHRRTHSDVLALLNDVSFDGDLGIVGGSDGLSVFDDTEEDLLPEYFVLDKSNLISETMEELSTSAADAGSSCIHQRKLQHSQSMVLKICIKTEMAKPGSENPSSAESDKSISAANLAELALTDPKRAKRIWANRQSAARSKERKMRYIAEL...

XP_057777794.1
MNMNSRSWLPPLGRSSVSSYNTKPEQSASSNLRPIGPECSFKKEHKMSSHSSQFSFEISRMPENPPNNLAHRRTHSDVLALLNDVSFDGDLGIVGGSDGLSVFDDTEEDLLPEYFVLDKSNLISETMEELSTSAADAGSSCIHQRKLQHSQSMVLKICIKTEMAKPGSENPSSAESDKSISAANLAELALTDPKRAKRIWANRQSAARSKERKMRYIAELQSKVQSLQTDKASSSMQFALMQEDTNCLASENIELKLQLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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