当前解析结果
SmilChr01G003839| 统一新 Gene ID | SmilChr01G003839 |
|---|---|
| 名称 | SmilChr01G003839 |
| 描述 | protein ALP1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56738737 - 56743534 / + |
| NCBI Gene ID | LOC130996180 |
|---|---|
| GeneID | 130996180 |
| locus_tag | - |
| NCBI Name | LOC130996180 |
| 原始查询 | SmilChr01G003839 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ALP1-like |
| 产物 | protein ALP1-like |
| Arabidopsis | AT5G41980 (AT5G41980)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33.1; qcov=0.899; evalue=5.3e-59; confidence=low |
| Rice | Os08g0106900- identity=40; qcov=0.961; evalue=4.52e-84; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF01609 (DDE_Tnp_1); PF13359 (DDE_Tnp_4); PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996180 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777678.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057777678.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057777678.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777678.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777678.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56741404 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B33,D10 |
Chr1:56741404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,D10 |
Chr1:56741462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr1:56741473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr1:56741477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C35 |
Chr1:56741538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:56741625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B59,C72 |
Chr1:56741652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B126,C72 |
Chr1:56741731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr1:56742350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777678.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
XP_057777684.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
XP_057777692.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
XP_057777698.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
XP_057777705.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
XP_057777711.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
XP_057777715.1PF26138
DUF8040 66-151 aa
PF01609
DDE_Tnp_1 176-343 aa
PF13359
DDE_Tnp_4 183-340 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777678.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777678.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777678.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
XP_057777684.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777684.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777684.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
XP_057777692.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777692.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777692.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
XP_057777698.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777698.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777698.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
XP_057777705.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777705.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777705.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
XP_057777711.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777711.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777711.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
XP_057777715.1 |
Pfam | PF26138 |
DUF8040 | Domain | 66 | 151 | 2e-23 | 82.8 | Domain of unknown function (DUF8040) |
XP_057777715.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 176 | 343 | 2.4e-08 | 34.7 | Transposase DDE domain |
XP_057777715.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 183 | 340 | 7.3e-23 | 81.7 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA7 records
下载 CDS FASTA7 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。