当前解析结果
SmilChr01G003854| 统一新 Gene ID | SmilChr01G003854 |
|---|---|
| 名称 | SmilChr01G003854 |
| 描述 | uncharacterized SmilChr01G003854 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56817080 - 56818981 / + |
| NCBI Gene ID | LOC131010449 |
|---|---|
| GeneID | 131010449 |
| locus_tag | - |
| NCBI Name | LOC131010449 |
| 原始查询 | SmilChr01G003854 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002]; symbol=AT3G17380; hit=AT3G17380; species=arabidopsis; confidence=low |
| 产物 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002]; symbol=AT3G17380; hit=AT3G17380; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G17380 (AT3G17380)TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002] identity=32.5; qcov=0.963; evalue=3.92e-41; confidence=low |
| Rice | Os10g0478450 (Os2M1)- identity=26.8; qcov=0.71; evalue=2.46e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00917 (MATH); PF22486 (MATH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010449 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057793963.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057793963.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793963.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793963.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793963.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56817137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B28,B65,B91,C57 |
Chr1:56817705 |
CG |
C |
1bp_deletion | frameshift_variant | 3 | B104,C74,D4 |
Chr1:56817705 |
CG |
C |
1bp_deletion | CDS_variant | 3 | B104,C74,D4 |
Chr1:56817994 |
T |
TCG |
2bp_insertion | frameshift_variant | 3 | B117,B140,C75 |
Chr1:56817994 |
T |
TCG |
2bp_insertion | CDS_variant | 3 | B117,B140,C75 |
Chr1:56817997 |
CAG |
C |
2bp_deletion | frameshift_variant | 3 | B117,B140,C75 |
Chr1:56817997 |
CAG |
C |
2bp_deletion | CDS_variant | 3 | B117,B140,C75 |
Chr1:56818150 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C49 |
Chr1:56818150 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C49 |
Chr1:56818217 |
A |
AT |
1bp_insertion | frameshift_variant | 15 | A22,B108,B117,B131,B140,B18,B32,C2,C20,C27,C45,C61,C69,C71,C75 |
Chr1:56818231 |
A |
AG |
1bp_insertion | frameshift_variant | 14 | A22,B108,B117,B131,B140,B18,B32,C2,C20,C27,C45,C61,C71,C75 |
Chr1:56818243 |
G |
GAA |
2bp_insertion | frameshift_variant | 12 | A22,B117,B140,B18,B32,C2,C20,C27,C45,C61,C71,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793963.1PF22486
MATH_2 76-141 aa
PF00917
MATH 76-143 aa
PF22486
MATH_2 164-288 aa
PF00917
MATH 170-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793963.1 |
Pfam | PF22486 |
MATH_2 | Domain | 76 | 141 | 8.6e-42 | 143.3 | MATH domain |
XP_057793963.1 |
Pfam | PF00917 |
MATH | Domain | 76 | 143 | 4e-13 | 50.3 | MATH domain |
XP_057793963.1 |
Pfam | PF22486 |
MATH_2 | Domain | 164 | 288 | 8.6e-42 | 143.3 | MATH domain |
XP_057793963.1 |
Pfam | PF00917 |
MATH | Domain | 170 | 289 | 4e-13 | 50.3 | MATH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。