Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003866`

染色体: Chr01 坐标: 56902543-56911371 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003866`
名称	SmilChr01G003866
描述	uncharacterized SmilChr01G003866
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56902543 - 56911371 / `+`

ID 对照

NCBI Gene ID	`LOC130997285`
GeneID	`130997285`
locus_tag	`-`
NCBI Name	`LOC130997285`
原始查询	`SmilChr01G003866`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0539700; species=rice; confidence=low
产物	hit=Os12g0539700; species=rice; confidence=low
Arabidopsis	`AT5G28780` (AT5G28780) PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:832993] identity=41.3; qcov=0.189; evalue=6.06e-59; confidence=weak
Rice	`Os12g0539700` - identity=40.5; qcov=0.318; evalue=2.71e-109; confidence=low
GO	GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair)
KEGG	-
Pfam	PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom)
InterPro	-
eggNOG	-
NR	GeneID:130997285

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778537.1`
2	Chromosome	染色体	0.00000	`XP_057778537.1`
3	Centromere	着丝粒	0.00000	`XP_057778537.1`
4	Chromatin	染色质	0.00000	`XP_057778537.1`
5	Telomere	端粒	0.00000	`XP_057778537.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56908274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr1:56908465`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B75
`Chr1:56908465`	`GC`	`G`	1bp_deletion	CDS_variant	1	B75
`Chr1:56908468`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B75
`Chr1:56908468`	`TC`	`T`	1bp_deletion	CDS_variant	1	B75
`Chr1:56908470`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B75
`Chr1:56908470`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B75
`Chr1:56908476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:56908481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:56908491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:56908494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:56908508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778537.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057778544.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057778550.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057778559.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057778568.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

XP_057778574.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

XP_057778580.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

XP_057778589.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778537.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778537.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057778537.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778544.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778544.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057778544.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778550.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778550.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057778550.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778559.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778559.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057778559.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778568.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778568.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.8e-95	317.6	PIF1-like helicase
`XP_057778568.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778574.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778574.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.8e-95	317.6	PIF1-like helicase
`XP_057778574.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778580.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778580.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.8e-95	317.6	PIF1-like helicase
`XP_057778580.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057778589.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057778589.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.8e-95	317.6	PIF1-like helicase
`XP_057778589.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057922567.1
AACCACTGGATATTAGCTAATTAACTTTTATATAAATAAGTTTTGTAATAAAGGCTCATTTTTTCTCATCTGCAGATTCACTTACAGTGCTCATATTAGCAAATCTCAGAAGCTTATATTACTCAAGAACAGTGATTCTAAATGAGAAAGCTAACAAAATCGTTGAAGATTACTGGCGTCAGATCAAATGCAGAAAATTCTACTGATGTTGAAAGGTCTATCTCTTCAAATGTTGTGGAGAATGTAGATAGTGTTGTTGA...

XM_057922597.1
AACCACTGGATATTAGCTAATTAACTTTTATATAAATAAGTTTTGTAATAAAGGCTCATTTTTTCTCATCTGCAGATTCACTTACAGTGCTCATATTAGCAAATCTCAGAAGCTTATATTACTCAAGAACAGTGATTCTAAATGAGAAAGCTAACAAAATCGTTGAAGATTACTGGCGTCAGATCAAATGCAGAAAATTCTACTGAATATTGGGATATTGGAGATGTTGTTCATGAATGTGAACATTGTTTTGCATTTTT...

CDS

8 records

下载 CDS FASTA

LOC130997285
ATGAGAAAGCTAACAAAATCGTTGAAGATTACTGGCGTCAGATCAAATGCAGAAAATTCTACTGATGTTGAAAGGTCTATCTCTTCAAATGTTGTGGAGAATGTAGATAGTGTTGTTGATTTTGAAGACAATGGTTCGAAATTTATCATTATTGATAAATTTAAAAAGCAAAAGAGATCTTTTTGTGTATCTTCATCTCCAAGTGATAATTCCATTATTGATCGTCGCAAGAAGAAGAAAGTTGAAAGTCAAGAATATTG...

Protein

8 records

下载 Protein FASTA

XP_057778537.1
MRKLTKSLKITGVRSNAENSTDVERSISSNVVENVDSVVDFEDNGSKFIIIDKFKKQKRSFCVSSSPSDNSIIDRRKKKKVESQEYWDIGDVVHECEHCFAFFWYEERLAKTVNSTKPKYSLCCMHGKIELPKAMCPPKVLYDLIFGNNAKSKHYLQNIRSYNNMFGFTSMGGKIDHSINQGNTPPIFRLHGQNYHLIGSLMPMEGCPPKFAQLYIYDTDNEVHNRILSVRDVGNFNELHTEIVRDLQAMLDEQNVLAKS...

XP_057778544.1
MRKLTKSLKITGVRSNAENSTDVERSISSNVVENVDSVVDFEDNGSKFIIIDKFKKQKRSFCVSSSPSDNSIIDRRKKKKVESQEYWDIGDVVHECEHCFAFFWYEERLAKTVNSTKPKYSLCCMHGKIELPKAMCPPKVLYDLIFGNNAKSKHYLQNIRSYNNMFGFTSMGGKIDHSINQGNTPPIFRLHGQNYHLIGSLMPMEGCPPKFAQLYIYDTDNEVHNRILSVRDVGNFNELHTEIVRDLQAMLDEQNVLAKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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