Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003869`

染色体: Chr01 坐标: 56938006-56948511 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003869`
名称	SmilChr01G003869
描述	uncharacterized SmilChr01G003869
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56938006 - 56948511 / `-`

ID 对照

NCBI Gene ID	`LOC130997395`
GeneID	`130997395`
locus_tag	`-`
NCBI Name	`LOC130997395`
原始查询	`SmilChr01G003869`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0227300; species=rice; confidence=high
产物	hit=Os03g0227300; species=rice; confidence=high
Arabidopsis	`AT3G52050` (AT3G52050) 5'-3' exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:824368] identity=67.7; qcov=0.85; evalue=2.94e-156; confidence=high
Rice	`Os03g0227300` - identity=65.4; qcov=0.88; evalue=2.69e-163; confidence=high
GO	GO:0003677 (DNA binding); GO:0017108 (5'-flap endonuclease activity); GO:0033567 (DNA replication, Okazaki fragment processing)
KEGG	-
Pfam	PF01367 (5_3_exonuc); PF02739 (5_3_exonuc_N)
InterPro	-
eggNOG	-
NR	GeneID:130997395

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778670.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057778670.1`
3	Mitochondrion	线粒体	0.40000	`XP_057778703.1`
4	Nucleus	细胞核	0.00000	`XP_057778670.1`
5	Chromosome	染色体	0.00000	`XP_057778670.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56938289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr1:56938307`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C28
`Chr1:56938307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr1:56938636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr1:56938760`	`T`	`TG`	1bp_insertion	frameshift_variant	146	A10,A13,A14,A18,A22,A4,A5,A7,A8,A9,B10,B100,B103,B104,B106,B107,B108,B111,B113,B114,B115,B12,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B134,B136,B138,B139,B140,B15,B16,B18,B20,B22,B23,B24,B29,B32,B37,B39,B40,B42,B43,B46,B50,B54,B56,B59,B6,B63,B64,B66,B67,B69,B70,B71,B73,B76,B78,B79,B81,B83,B84,B85,B86,B89,B9,B93,B95,B96,C10,C12,C13,C15,C16,C17,C19,C2,C20,C24,C26,C27,C28,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C42,C43,C44,C47,C5,C53,C54,C56,C58,C59,C6,C61,C63,C64,C65,C66,C68,C69,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C85,C86,C87,C9,D10,D11,D3,D4,D6,D7,D8,D9
`Chr1:56940658`	`C`	`CA`	1bp_insertion	frameshift_variant	27	A18,A4,A7,B10,B100,B107,B114,B12,B140,B23,B29,B40,B42,B43,B84,C35,C37,C44,C53,C59,C64,C66,C81,C83,C9,D11,D3
`Chr1:56941783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B38,B63,B70,C9
`Chr1:56942328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr1:56942340`	`CAT`	`C`	2bp_deletion	frameshift_variant	60	A11,A16,A19,A20,A21,A24,A8,B10,B100,B102,B105,B119,B125,B127,B131,B15,B18,B20,B23,B31,B39,B41,B46,B51,B53,B56,B6,B62,B65,B71,B76,B77,B8,B85,B9,B90,B94,C15,C21,C25,C26,C27,C33,C37,C39,C42,C48,C54,C58,C67,C72,C74,C75,C78,C80,C82,C85,C9,D4,D5
`Chr1:56947604`	`AT`	`A`	1bp_deletion	frameshift_variant	4	C60,C68,C70,C80
`Chr1:56947604`	`AT`	`A`	1bp_deletion	CDS_variant	4	C60,C68,C70,C80
`Chr1:56947636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778670.1

441 aa

220

441

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-401 aa

XP_057778678.1

441 aa

220

441

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-401 aa

XP_057778686.1

441 aa

220

441

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-401 aa

XP_057778694.1

440 aa

220

440

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-302 aa PF01367 5_3_exonuc 305-400 aa

XP_057778703.1

426 aa

213

426

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-364 aa

XP_057778712.1

423 aa

212

423

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 112-285 aa PF01367 5_3_exonuc 288-383 aa

XP_057778721.1

422 aa

211

422

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 112-284 aa PF01367 5_3_exonuc 287-382 aa

XP_057778729.1

422 aa

211

422

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 112-284 aa PF01367 5_3_exonuc 287-382 aa

XP_057778738.1

416 aa

208

416

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-377 aa

XP_057778747.1

401 aa

200

401

5_3_exonuc_N

5_3_exonuc

PF02739 5_3_exonuc_N 195-303 aa PF01367 5_3_exonuc 306-362 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778670.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.5e-36	126.3	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778670.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	401	1.8e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057778678.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.5e-36	126.3	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778678.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	401	1.8e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057778686.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.5e-36	126.3	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778686.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	401	1.8e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057778694.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	302	1.8e-38	132.6	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778694.1`	Pfam	`PF01367`	5_3_exonuc	Domain	305	400	1.9e-26	93.1	5'-3' exonuclease, C-terminal SAM fold
`XP_057778703.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.4e-36	126.4	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778703.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	364	2.1e-18	67.3	5'-3' exonuclease, C-terminal SAM fold
`XP_057778712.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	112	285	5.1e-41	140.8	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778712.1`	Pfam	`PF01367`	5_3_exonuc	Domain	288	383	1.7e-26	93.3	5'-3' exonuclease, C-terminal SAM fold
`XP_057778721.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	112	284	5.9e-43	147.1	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778721.1`	Pfam	`PF01367`	5_3_exonuc	Domain	287	382	1.7e-26	93.2	5'-3' exonuclease, C-terminal SAM fold
`XP_057778729.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	112	284	5.9e-43	147.1	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778729.1`	Pfam	`PF01367`	5_3_exonuc	Domain	287	382	1.7e-26	93.2	5'-3' exonuclease, C-terminal SAM fold
`XP_057778738.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.2e-36	126.6	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778738.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	377	4.6e-23	82.3	5'-3' exonuclease, C-terminal SAM fold
`XP_057778747.1`	Pfam	`PF02739`	5_3_exonuc_N	Domain	195	303	1.2e-36	126.7	5'-3' exonuclease, N-terminal resolvase-like domain
`XP_057778747.1`	Pfam	`PF01367`	5_3_exonuc	Domain	306	362	6e-18	65.9	5'-3' exonuclease, C-terminal SAM fold

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

13 records

下载 cDNA FASTA

XR_009093084.1
TGTTCATTTTGTAAACAAAATTAAGATAATTTTGTCAGAAAATAAGAACAGACCGGCGCAGTCCATCTTTTCTCCTCACCCTCCTCACCTCCCCGCCGATAGCCACCGCCTGTACCCGTTTATTTTCCCTTTCTGACTAATCCAGTCGGCGTGCCGCAGCCACCCTTACTCTCCTCAGGTCGCTGCTGAGTGACTGCGGGCCGCGTCCAAAGCCACCTCTCTACAACTACCTGGCTGGGGGCTGGAGCCCCCTCCAAGCC...

XR_009093079.1
TGTTCATTTTGTAAACAAAATTAAGATAATTTTGTCAGAAAATAAGAACAGACCGGCGCAGTCCATCTTTTCTCCTCACCCTCCTCACCTCCCCGCCGATAGCCACCGCCTGTACCCGTTTATTTTCCCTTTCTGACTAATCCAGTCGGCGTGCCGCAGCCACCCTTACTCTCCTCAGGTCGCTGCTGAGTGACTGCGGGCCGCGTCCAAAGCCACCTCTCTACAACTACCTGGCTGGGGGCTGGAGCCCCCTCCAAGCC...

CDS

10 records

下载 CDS FASTA

LOC130997395
ATGGCTTGCTTTCAAATTCCGCACCAACAACTTCATATTTTCTGGAGGACGTCTTATTGCTGCGGGAGGAGTCTCTCTGTGAAACAGAAGTTAGGCCACAAATTGACGTCTAGTGGAGATTCAGGAAGGTCATATTCACGCCTTCTTTTTAAAAAGGACTCATGCAAAGTGAGACCTAGTTTGAGTTCTGGATTTTGTAAAGTTCTGCAACCTATCTGTTTGAGAGGTGTCAGTACAGCTGCTCAAAACGCAACGCTTAG...

Protein

10 records

下载 Protein FASTA

XP_057778670.1
MACFQIPHQQLHIFWRTSYCCGRSLSVKQKLGHKLTSSGDSGRSYSRLLFKKDSCKVRPSLSSGFCKVLQPICLRGVSTAAQNATLSQSTLLDTAPREDGSTAALNPSNGRVMLIDGTSIMYRAYYKLIAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEYIPSHVAVVFDHDGVPYGHASLSSKQSFVGKGINFRHTLYPSYKSNRPPTPDTVVQGLQYLKASLKAMSIKVIEQVPGVEADDVIGTLAVKSVNAGFK...

XP_057778678.1
MACFQIPHQQLHIFWRTSYCCGRSLSVKQKLGHKLTSSGDSGRSYSRLLFKKDSCKVRPSLSSGFCKVLQPICLRGVSTAAQNATLSQSTLLDTAPREDGSTAALNPSNGRVMLIDGTSIMYRAYYKLIAKLHHGHLSHADGNGDWVLTIFSALSLIIDVLEYIPSHVAVVFDHDGVPYGHASLSSKQSFVGKGINFRHTLYPSYKSNRPPTPDTVVQGLQYLKASLKAMSIKVIEQVPGVEADDVIGTLAVKSVNAGFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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