当前解析结果
SmilChr01G003914| 统一新 Gene ID | SmilChr01G003914 |
|---|---|
| 名称 | SmilChr01G003914 |
| 描述 | protein NLP9-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57405401 - 57411719 / - |
| NCBI Gene ID | LOC130997939 |
|---|---|
| GeneID | 130997939 |
| locus_tag | - |
| NCBI Name | LOC130997939 |
| 原始查询 | SmilChr01G003914 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NLP9-like |
| 产物 | protein NLP9-like |
| Arabidopsis | AT3G59580 (AT3G59580)Plant regulator RWP-RK family protein [Source:NCBI gene (formerly Entrezgene);Acc:825127] identity=48.1; qcov=0.98; evalue=0; confidence=high |
| Rice | Os04g0495800- identity=54.5; qcov=0.537; evalue=0; confidence=medium |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00564 (PB1); PF02042 (RWP-RK); PF22922 (GAF_NLP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997939 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779362.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779362.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779362.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779362.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779362.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57406010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B92,C4 |
Chr1:57406124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr1:57406211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B76 |
Chr1:57406333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B95,C40 |
Chr1:57406429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B55,B56,B96,C36 |
Chr1:57406631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:57406787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,D2 |
Chr1:57406804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr1:57406808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C76 |
Chr1:57407158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:57407636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr1:57407646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B137,B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779362.1PF22922
GAF_NLP 330-512 aa
PF02042
RWP-RK 594-664 aa
PF00564
PB1 913-993 aa
XP_057779368.1PF22922
GAF_NLP 330-512 aa
PF02042
RWP-RK 586-656 aa
PF00564
PB1 905-985 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779362.1 |
Pfam | PF22922 |
GAF_NLP | Domain | 330 | 512 | 6.3e-84 | 280.5 | NLP protein GAF domain |
XP_057779362.1 |
Pfam | PF02042 |
RWP-RK | Domain | 594 | 664 | 2.6e-26 | 92.3 | RWP-RK domain |
XP_057779362.1 |
Pfam | PF00564 |
PB1 | Domain | 913 | 993 | 2.5e-19 | 69.7 | PB1 domain |
XP_057779368.1 |
Pfam | PF22922 |
GAF_NLP | Domain | 330 | 512 | 6.1e-84 | 280.5 | NLP protein GAF domain |
XP_057779368.1 |
Pfam | PF02042 |
RWP-RK | Domain | 586 | 656 | 2.6e-26 | 92.3 | RWP-RK domain |
XP_057779368.1 |
Pfam | PF00564 |
PB1 | Domain | 905 | 985 | 3.2e-19 | 69.4 | PB1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。