当前解析结果
SmilChr01G003926| 统一新 Gene ID | SmilChr01G003926 |
|---|---|
| 名称 | SmilChr01G003926 |
| 描述 | histone-lysine N-methyltransferase ATX2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57511064 - 57524805 / - |
| NCBI Gene ID | LOC130998035 |
|---|---|
| GeneID | 130998035 |
| locus_tag | - |
| NCBI Name | LOC130998035 |
| 原始查询 | SmilChr01G003926 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | histone-lysine N-methyltransferase ATX2-like |
| 产物 | histone-lysine N-methyltransferase ATX2-like |
| Arabidopsis | AT1G05830 (ATX2)trithorax-like protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:837093] identity=53.4; qcov=0.981; evalue=0; confidence=high |
| Rice | Os09g0134500 (OsTrx1)- identity=54.2; qcov=0.848; evalue=0; confidence=high |
| GO | GO:0000785 (chromatin); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00855 (PWWP); PF00856 (SET); PF05964 (FYRN); PF05965 (FYRC); PF13771 (zf-HC5HC2H); PF13831 (PHD_2); PF13832 (zf-HC5HC2H_2); PF21743 (PTM_DIR17_Tudor) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998035 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779455.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779455.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779455.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779455.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779455.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57513744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C52 |
Chr1:57521808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:57521834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:57521870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr1:57521875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B75,C26 |
Chr1:57523379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B89,C34,C46 |
Chr1:57523962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,C53 |
Chr1:57524092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:57524179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779455.1PF21743
PTM_DIR17_Tudor 227-256 aa
PF00855
PWWP 310-396 aa
PF05964
FYRN 451-508 aa
PF05965
FYRC 515-587 aa
PF13831
PHD_2 629-662 aa
PF13832
zf-HC5HC2H_2 672-793 aa
PF13771
zf-HC5HC2H 692-794 aa
PF00856
SET 929-1035 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779455.1 |
Pfam | PF21743 |
PTM_DIR17_Tudor | Domain | 227 | 256 | 4.4e-07 | 30.3 | PTM/DIR17-like, Tudor domain |
XP_057779455.1 |
Pfam | PF00855 |
PWWP | Domain | 310 | 396 | 2.1e-17 | 64.1 | PWWP domain |
XP_057779455.1 |
Pfam | PF05964 |
FYRN | Family | 451 | 508 | 5.7e-19 | 68.2 | F/Y-rich N-terminus |
XP_057779455.1 |
Pfam | PF05965 |
FYRC | Family | 515 | 587 | 1.1e-12 | 48.7 | F/Y rich C-terminus |
XP_057779455.1 |
Pfam | PF13831 |
PHD_2 | Family | 629 | 662 | 1.3e-06 | 28.5 | PHD-finger |
XP_057779455.1 |
Pfam | PF13832 |
zf-HC5HC2H_2 | Domain | 672 | 793 | 3.7e-31 | 108.3 | PHD-zinc-finger like domain |
XP_057779455.1 |
Pfam | PF13771 |
zf-HC5HC2H | Domain | 692 | 794 | 4.2e-20 | 72.4 | PHD-like zinc-binding domain |
XP_057779455.1 |
Pfam | PF00856 |
SET | Family | 929 | 1035 | 9.4e-25 | 87.8 | SET domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。