当前解析结果
SmilChr01G003929| 统一新 Gene ID | SmilChr01G003929 |
|---|---|
| 名称 | SmilChr01G003929 |
| 描述 | ATP-dependent DNA helicase 2 subunit KU70 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57556138 - 57563706 / - |
| NCBI Gene ID | LOC130998056 |
|---|---|
| GeneID | 130998056 |
| locus_tag | - |
| NCBI Name | LOC130998056 |
| 原始查询 | SmilChr01G003929 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase 2 subunit KU70 |
| 产物 | ATP-dependent DNA helicase 2 subunit KU70 |
| Arabidopsis | AT1G16970 (KU70)ATP-dependent DNA helicase 2 subunit Ku70-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838268] identity=65.5; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0184900 (OsKu70)- identity=64.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0003684 (damaged DNA binding); GO:0003690 (double-stranded DNA binding); GO:0005634 (nucleus); GO:0006303 (double-strand break repair via nonhomologous end joining); GO:0042162 (telomeric repeat DNA binding); GO:0043564 (Ku70:Ku80 complex); GO:0071480 (cellular response to gamma radiation); GO:0071481 (cellular response to X-ray) |
| KEGG | smil03450 (Non-homologous end-joining - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02037 (SAP); PF02735 (Ku); PF03730 (Ku_C); PF03731 (Ku_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998056 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779477.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057779477.1 |
| 3 | Telomere | 端粒 | 0.40000 | XP_057779477.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779477.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779477.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57556409 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B13 |
Chr1:57556409 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B13 |
Chr1:57556640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C4 |
Chr1:57556911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B74,C45 |
Chr1:57557281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:57559047 |
GTC |
G |
2bp_deletion | frameshift_variant | 1 | B16 |
Chr1:57559047 |
GTC |
G |
2bp_deletion | CDS_variant | 1 | B16 |
Chr1:57559893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr1:57559985 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C44 |
Chr1:57559985 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C44 |
Chr1:57560020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B129,D7 |
Chr1:57561074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779477.1PF03731
Ku_N 30-264 aa
PF02735
Ku 276-470 aa
PF03730
Ku_C 484-564 aa
PF02037
SAP 590-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779477.1 |
Pfam | PF03731 |
Ku_N | Domain | 30 | 264 | 8.6e-52 | 176.7 | Ku70/Ku80 N-terminal alpha/beta domain |
XP_057779477.1 |
Pfam | PF02735 |
Ku | Domain | 276 | 470 | 3.8e-38 | 132.0 | Ku70/Ku80 beta-barrel domain |
XP_057779477.1 |
Pfam | PF03730 |
Ku_C | Family | 484 | 564 | 3.3e-18 | 66.8 | Ku70/Ku80 C-terminal arm |
XP_057779477.1 |
Pfam | PF02037 |
SAP | Domain | 590 | 623 | 7.4e-08 | 32.6 | SAP domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。