当前解析结果
SmilChr01G003933| 统一新 Gene ID | SmilChr01G003933 |
|---|---|
| 名称 | SmilChr01G003933 |
| 描述 | uncharacterized SmilChr01G003933 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57626514 - 57635669 / + |
| NCBI Gene ID | LOC130998091 |
|---|---|
| GeneID | 130998091 |
| locus_tag | - |
| NCBI Name | LOC130998091 |
| 原始查询 | SmilChr01G003933 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:841090]; symbol=AT1G45207; hit=AT1G45207; species=arabidopsis; confidence=high |
| 产物 | Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:841090]; symbol=AT1G45207; hit=AT1G45207; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G45207 (AT1G45207)Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:841090] identity=48.1; qcov=0.982; evalue=1.69e-108; confidence=high |
| Rice | Os02g0767000 (OsREM5.1)- identity=41.3; qcov=0.767; evalue=1.71e-60; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF03763 (Remorin_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998091 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057779508.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057779513.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057779508.1 |
| 4 | Cytoplasm | 细胞质 | 0.40000 | XP_057779513.1 |
| 5 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057779508.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57626807 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | C32 |
Chr1:57626807 |
CG |
C |
1bp_deletion | CDS_variant | 1 | C32 |
Chr1:57626810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B133,D7 |
Chr1:57626822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:57627506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr1:57627773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B16,B24 |
Chr1:57627855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,D7 |
Chr1:57628021 |
C |
CTT |
2bp_insertion | frameshift_variant | 12 | B105,B118,B34,B40,B66,B70,B80,C13,C34,C61,C8,D11 |
Chr1:57628145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B34,B80,C13,C34,C56 |
Chr1:57628178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:57628198 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A19,B105,B118,B18,B66,B70 |
Chr1:57628233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779508.1PF03763
Remorin_C 471-561 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779508.1 |
Pfam | PF03763 |
Remorin_C | Family | 471 | 561 | 2.3e-22 | 79.5 | Remorin, C-terminal region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。