当前解析结果
SmilChr01G003942| 统一新 Gene ID | SmilChr01G003942 |
|---|---|
| 名称 | SmilChr01G003942 |
| 描述 | transcription factor MYB73-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57754694 - 57755858 / - |
| NCBI Gene ID | LOC130998150 |
|---|---|
| GeneID | 130998150 |
| locus_tag | - |
| NCBI Name | LOC130998150 |
| 原始查询 | SmilChr01G003942 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB73-like |
| 产物 | transcription factor MYB73-like |
| Arabidopsis | AT4G37260 (MYB73)myb domain protein 73 [Source:NCBI gene (formerly Entrezgene);Acc:829880] identity=54.2; qcov=1.05; evalue=6.61e-84; confidence=high |
| Rice | Os09g0106700 (R2R3-MYB)- identity=48; qcov=1.25; evalue=3.77e-74; confidence=high |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998150 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779567.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057779567.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779567.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779567.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779567.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57754988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B33 |
Chr1:57755016 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B112,D6 |
Chr1:57755016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,D6 |
Chr1:57755020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,D6 |
Chr1:57755048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:57755070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:57755095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:57755107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:57755181 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr1:57755182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr1:57755281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,A5 |
Chr1:57755284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B78,B93,C48,C68,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779567.1PF00249
Myb_DNA-binding 5-51 aa
PF13921
Myb_DNA-bind_6 8-65 aa
PF00249
Myb_DNA-binding 59-101 aa
PF13921
Myb_DNA-bind_6 60-106 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779567.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 5 | 51 | 1.1e-39 | 135.0 | Myb-like DNA-binding domain |
XP_057779567.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 8 | 65 | 1.7e-29 | 102.5 | Myb-like DNA-binding domain |
XP_057779567.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 59 | 101 | 1.1e-39 | 135.0 | Myb-like DNA-binding domain |
XP_057779567.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 60 | 106 | 1.7e-29 | 102.5 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。