当前解析结果
SmilChr01G003946| 统一新 Gene ID | SmilChr01G003946 |
|---|---|
| 名称 | SmilChr01G003946 |
| 描述 | cyclin-D3-1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57815244 - 57817311 / - |
| NCBI Gene ID | LOC130998163 |
|---|---|
| GeneID | 130998163 |
| locus_tag | - |
| NCBI Name | LOC130998163 |
| 原始查询 | SmilChr01G003946 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyclin-D3-1-like |
| 产物 | cyclin-D3-1-like |
| Arabidopsis | AT4G34160 (CYCD3;1)CYCLIN D3;1 [Source:NCBI gene (formerly Entrezgene);Acc:829564] identity=46.4; qcov=0.854; evalue=1.1e-71; confidence=high |
| Rice | Os09g0466100 (CycD2)- identity=39.2; qcov=0.828; evalue=2.68e-41; confidence=medium |
| GO | GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00134 (Cyclin_N); PF02984 (Cyclin_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998163 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779581.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779581.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779581.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779581.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779581.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57815438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C31 |
Chr1:57815506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C68 |
Chr1:57815593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:57815924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B140,B75,C87,D9 |
Chr1:57815971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,B8,C10 |
Chr1:57815997 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B36,C83 |
Chr1:57815997 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B36,C83 |
Chr1:57816009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:57816022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B140,B53,B8,D9 |
Chr1:57816030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:57816054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B140,D9 |
Chr1:57816090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779581.1PF00134
Cyclin_N 66-163 aa
PF02984
Cyclin_C 165-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779581.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 66 | 163 | 1.5e-23 | 83.6 | Cyclin, N-terminal domain |
XP_057779581.1 |
Pfam | PF02984 |
Cyclin_C | Domain | 165 | 260 | 1.9e-14 | 54.4 | Cyclin, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。