当前解析结果
SmilChr01G003948| 统一新 Gene ID | SmilChr01G003948 |
|---|---|
| 名称 | SmilChr01G003948 |
| 描述 | putative F-box/LRR-repeat protein 8 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57859096 - 57862319 / + |
| NCBI Gene ID | LOC130998179 |
|---|---|
| GeneID | 130998179 |
| locus_tag | - |
| NCBI Name | LOC130998179 |
| 原始查询 | SmilChr01G003948 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative F-box/LRR-repeat protein 8 |
| 产物 | putative F-box/LRR-repeat protein 8 |
| Arabidopsis | AT4G07400 (VFB3)VIER F-box protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:826171] identity=58.7; qcov=0.985; evalue=0; confidence=high |
| Rice | Os04g0505700 (OsFbox227)- identity=57.6; qcov=0.649; evalue=9.28e-123; confidence=high |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF25372 (LRR_FBXL15) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998179 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057779597.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057779597.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057779597.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779597.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779597.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57860483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,B92,D10 |
Chr1:57860513 |
GA |
G |
1bp_deletion | frameshift_variant | 23 | A1,A5,B102,B124,B2,B27,B28,B32,B64,B65,B75,B86,B91,B92,B93,C11,C32,C41,C56,C60,C80,C9,D9 |
Chr1:57860535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,C11,C84 |
Chr1:57860540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B112,B124,B32,C9 |
Chr1:57860573 |
T |
TG |
1bp_insertion | frameshift_variant | 43 | A1,A15,A5,A7,A9,B102,B111,B112,B124,B129,B14,B2,B27,B28,B30,B32,B37,B53,B63,B64,B65,B75,B81,B86,B91,B92,B93,C11,C24,C32,C33,C41,C49,C60,C64,C68,C78,C80,C83,C9,D10,D5,D9 |
Chr1:57860674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,D7 |
Chr1:57860675 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B70 |
Chr1:57860675 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B70 |
Chr1:57860682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,D7 |
Chr1:57860958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C4 |
Chr1:57860974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:57860998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779597.1PF12937
F-box-like 38-68 aa
PF00646
F-box 38-69 aa
PF25372
LRR_FBXL15 268-438 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779597.1 |
Pfam | PF12937 |
F-box-like | Domain | 38 | 68 | 2.6e-07 | 31.0 | F-box-like |
XP_057779597.1 |
Pfam | PF00646 |
F-box | Domain | 38 | 69 | 2.6e-07 | 31.0 | F-box domain |
XP_057779597.1 |
Pfam | PF25372 |
LRR_FBXL15 | Repeat | 268 | 438 | 1.5e-14 | 54.0 | F-box/LRR-repeat protein 15, leucine rich repeat domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。