Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003969`

染色体: Chr01 坐标: 58134832-58137996 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003969`
名称	SmilChr01G003969
描述	uncharacterized SmilChr01G003969
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58134832 - 58137996 / `-`

ID 对照

NCBI Gene ID	`LOC130998367`
GeneID	`130998367`
locus_tag	`-`
NCBI Name	`LOC130998367`
原始查询	`SmilChr01G003969`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:835672]; symbol=AT5G55780; hit=AT5G55780; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:835672]; symbol=AT5G55780; hit=AT5G55780; species=arabidopsis; confidence=low
Arabidopsis	`AT5G55780` (AT5G55780) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:835672] identity=26.7; qcov=0.949; evalue=9.88e-26; confidence=low
Rice	`Os07g0611200` - identity=30.6; qcov=0.368; evalue=4.87e-11; confidence=low
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:130998367

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057779772.1`
2	Nucleus	细胞核	0.20000	`XP_057779772.1`
3	Vacuole	液泡	0.20000	`XP_057779772.1`
4	Chromosome	染色体	0.00000	`XP_057779772.1`
5	Centromere	着丝粒	0.00000	`XP_057779772.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58135420`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C51
`Chr1:58135420`	`ATC`	`A`	2bp_deletion	CDS_variant	1	C51
`Chr1:58135425`	`T`	`TTG`	2bp_insertion	frameshift_variant	1	C51
`Chr1:58135425`	`T`	`TTG`	2bp_insertion	CDS_variant	1	C51
`Chr1:58135426`	`A`	`AT`	1bp_insertion	frameshift_variant	15	B119,B120,B127,B27,B45,B58,B61,B87,C13,C21,C24,C29,C38,C49,C76
`Chr1:58135430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B47,C17,C65
`Chr1:58135464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B108,B117,B121
`Chr1:58135467`	`GCA`	`G`	2bp_deletion	frameshift_variant	1	B125
`Chr1:58135467`	`GCA`	`G`	2bp_deletion	CDS_variant	1	B125
`Chr1:58135471`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	B125
`Chr1:58135471`	`G`	`GAA`	2bp_insertion	CDS_variant	1	B125
`Chr1:58135516`	`T`	`TAA`	2bp_insertion	frameshift_variant	1	C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779772.1

489 aa

244

489

C1_2

PF03107 C1_2 15-64 aa PF03107 C1_2 74-119 aa PF03107 C1_2 135-182 aa PF03107 C1_2 192-242 aa PF03107 C1_2 396-438 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779772.1`	Pfam	`PF03107`	C1_2	Domain	15	64	1.5e-42	144.3	C1 domain
`XP_057779772.1`	Pfam	`PF03107`	C1_2	Domain	74	119	1.5e-42	144.3	C1 domain
`XP_057779772.1`	Pfam	`PF03107`	C1_2	Domain	135	182	1.5e-42	144.3	C1 domain
`XP_057779772.1`	Pfam	`PF03107`	C1_2	Domain	192	242	1.5e-42	144.3	C1 domain
`XP_057779772.1`	Pfam	`PF03107`	C1_2	Domain	396	438	1.5e-42	144.3	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923789.1
AAATCTCAGTTCAAATTACACTCACACACATTCTGTTTGTTGAGAAGAAGAAAAGAAAGAGACGATGAGCGAGAAGGGAAAGAATGAGGTGATTGAGCTTGATCATTTCTTCCATAAACATCCACTCATTTTGACGGAAAGAGCTGGCCGTACTGAATACGACTTATGTTCTGGCTGCTGGAGGTACATCTTCTCCGGAGAGACGATCTACAGATGCCGCGACTGCAGCAGCCCAACGTTACACGAAGAATGCGCAGAAA...

CDS

1 records

下载 CDS FASTA

LOC130998367
ATGAGCGAGAAGGGAAAGAATGAGGTGATTGAGCTTGATCATTTCTTCCATAAACATCCACTCATTTTGACGGAAAGAGCTGGCCGTACTGAATACGACTTATGTTCTGGCTGCTGGAGGTACATCTTCTCCGGAGAGACGATCTACAGATGCCGCGACTGCAGCAGCCCAACGTTACACGAAGAATGCGCAGAAATGCCGCGAGAGATAACGCTCTCCTTGCACCCTCAACACACCCTCGTCCAAAAAGAGAGCCGTCG...

Protein

1 records

下载 Protein FASTA

XP_057779772.1
MSEKGKNEVIELDHFFHKHPLILTERAGRTEYDLCSGCWRYIFSGETIYRCRDCSSPTLHEECAEMPREITLSLHPQHTLVQKESRRRSCSVCGKGIRGIGYYCSSSGSCQFQIHLGCARSMDVMGAAAAGNQHPSHPQHELKLLWRPGRAASLRCDACSTIHRGNSYLCTVCQYSINESCAALPATLDHHLHGHPLSLAYCLPLDYIKWNFKCDVCFKDLLRKYWVYHCEICRYVAHINCAITTSPVIMSNIDVDAVDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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