当前解析结果
SmilChr01G003971| 统一新 Gene ID | SmilChr01G003971 |
|---|---|
| 名称 | SmilChr01G003971 |
| 描述 | uncharacterized SmilChr01G003971 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 58145638 - 58148381 / - |
| NCBI Gene ID | LOC130998380 |
|---|---|
| GeneID | 130998380 |
| locus_tag | - |
| NCBI Name | LOC130998380 |
| 原始查询 | SmilChr01G003971 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:834030]; symbol=AT5G40320; hit=AT5G40320; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:834030]; symbol=AT5G40320; hit=AT5G40320; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G40320 (AT5G40320)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:834030] identity=26.2; qcov=0.883; evalue=1.3e-32; confidence=low |
| Rice | Os09g0492800- identity=29.6; qcov=0.283; evalue=8.65e-12; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998380 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057779782.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057779782.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779782.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779782.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779782.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:58145862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D3,D9 |
Chr1:58145865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C11,C2,C32,C68,C69 |
Chr1:58145924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B47,C17,C65 |
Chr1:58145967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B101,B25,B88,C25 |
Chr1:58145975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B101,B25,B88,C25 |
Chr1:58146033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr1:58146034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr1:58146170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B47,C17,C65 |
Chr1:58146193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B75,C5 |
Chr1:58146213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B119,B47,C17,C65 |
Chr1:58146375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B47,C17,C65 |
Chr1:58146423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B119,B47,C17,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779782.1PF03107
C1_2 15-63 aa
PF03107
C1_2 73-117 aa
PF03107
C1_2 134-181 aa
PF03107
C1_2 191-241 aa
PF03107
C1_2 461-511 aa
PF03107
C1_2 524-570 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779782.1 |
Pfam | PF03107 |
C1_2 | Domain | 15 | 63 | 6.7e-61 | 203.1 | C1 domain |
XP_057779782.1 |
Pfam | PF03107 |
C1_2 | Domain | 73 | 117 | 6.7e-61 | 203.1 | C1 domain |
XP_057779782.1 |
Pfam | PF03107 |
C1_2 | Domain | 134 | 181 | 6.7e-61 | 203.1 | C1 domain |
XP_057779782.1 |
Pfam | PF03107 |
C1_2 | Domain | 191 | 241 | 6.7e-61 | 203.1 | C1 domain |
XP_057779782.1 |
Pfam | PF03107 |
C1_2 | Domain | 461 | 511 | 6.7e-61 | 203.1 | C1 domain |
XP_057779782.1 |
Pfam | PF03107 |
C1_2 | Domain | 524 | 570 | 6.7e-61 | 203.1 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。