当前解析结果
SmilChr01G003976| 统一新 Gene ID | SmilChr01G003976 |
|---|---|
| 名称 | SmilChr01G003976 |
| 描述 | subtilisin-like protease SBT3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 58197199 - 58199890 / - |
| NCBI Gene ID | LOC130998412 |
|---|---|
| GeneID | 130998412 |
| locus_tag | - |
| NCBI Name | LOC130998412 |
| 原始查询 | SmilChr01G003976 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | subtilisin-like protease SBT3 |
| 产物 | subtilisin-like protease SBT3 |
| Arabidopsis | AT5G67090 (AT5G67090)Subtilisin-like serine endopeptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836844] identity=40.8; qcov=1.02; evalue=4.37e-176; confidence=medium |
| Rice | Os05g0435800 (OsSub47)- identity=45.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00082 (Peptidase_S8); PF05922 (Inhibitor_I9); PF17766 (fn3_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998412 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057779812.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057779812.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779812.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779812.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779812.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:58197370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B119,B24,B47,C65 |
Chr1:58197385 |
G |
GGT |
2bp_insertion | frameshift_variant | 1 | C74 |
Chr1:58197385 |
G |
GGT |
2bp_insertion | CDS_variant | 1 | C74 |
Chr1:58197560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr1:58197625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B124,B19,B96,C61,C78 |
Chr1:58197667 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B19,C61,C78 |
Chr1:58198323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B26,B3,C29 |
Chr1:58198635 |
TCC |
T |
2bp_deletion | frameshift_variant | 39 | A10,A13,A22,A23,A9,B100,B105,B108,B109,B114,B13,B140,B21,B23,B35,B37,B46,B50,B55,B6,B68,B69,B78,B79,B85,B88,B91,B94,C11,C23,C25,C39,C48,C53,C57,C69,C8,D1,D2 |
Chr1:58198644 |
CAA |
C |
2bp_deletion | frameshift_variant | 38 | A10,A13,A22,A23,A9,B100,B108,B109,B114,B13,B140,B21,B23,B35,B37,B46,B50,B55,B6,B68,B69,B78,B79,B85,B88,B91,B94,C11,C23,C25,C39,C48,C53,C57,C69,C8,D1,D2 |
Chr1:58198648 |
CAT |
C |
2bp_deletion | frameshift_variant | 38 | A10,A13,A22,A23,A9,B100,B108,B109,B114,B13,B140,B21,B23,B35,B37,B46,B50,B55,B6,B68,B69,B78,B79,B85,B88,B91,B94,C11,C23,C25,C39,C48,C53,C57,C69,C8,D1,D2 |
Chr1:58199175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr1:58199283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B123 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779812.1PF05922
Inhibitor_I9 27-110 aa
PF00082
Peptidase_S8 136-577 aa
PF17766
fn3_6 649-752 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779812.1 |
Pfam | PF05922 |
Inhibitor_I9 | Domain | 27 | 110 | 6e-15 | 56.4 | Peptidase inhibitor I9 |
XP_057779812.1 |
Pfam | PF00082 |
Peptidase_S8 | Domain | 136 | 577 | 4.2e-43 | 148.4 | Subtilase family |
XP_057779812.1 |
Pfam | PF17766 |
fn3_6 | Domain | 649 | 752 | 1.8e-27 | 96.1 | Fibronectin type-III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。