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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003977

染色体: Chr01 坐标: 58229284-58236430 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003977
名称SmilChr01G003977
描述probable E3 ubiquitin-protein ligase RHG1A
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向58229284 - 58236430 / +

ID 对照

NCBI Gene IDLOC130998424
GeneID130998424
locus_tag-
NCBI NameLOC130998424
原始查询SmilChr01G003977

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable E3 ubiquitin-protein ligase RHG1A
产物probable E3 ubiquitin-protein ligase RHG1A
ArabidopsisAT5G42940 (AT5G42940)
RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834306]
identity=33.8; qcov=1.06; evalue=3.97e-92; confidence=low
RiceOs04g0648800 (OsHIP1)
-
identity=35.4; qcov=1.02; evalue=3.6e-88; confidence=medium
GOGO:0061630 (ubiquitin protein ligase activity)
KEGG-
PfamPF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF17123 (zf-RING_11)
InterPro-
eggNOG-
NRGeneID:130998424

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057779824.1
2 Nucleoplasm 核质 0.40000 XP_057779824.1
3 Nuclear body 核内小体 0.20000 XP_057779824.1
4 PML body PML body 0.20000 XP_057779824.1
5 Cytoplasm 细胞质 0.20000 XP_057779824.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:58231785 C T EMS_canonical_SNV CDS_variant 4 B124,B19,C61,C78
Chr1:58231827 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:58232017 G A EMS_canonical_SNV CDS_variant 2 A18,C46
Chr1:58232200 C T EMS_canonical_SNV CDS_variant 1 B111
Chr1:58232201 G A EMS_canonical_SNV CDS_variant 3 B23,B67,C14
Chr1:58232340 C T EMS_canonical_SNV CDS_variant 1 B137
Chr1:58232495 C T EMS_canonical_SNV CDS_variant 1 C33
Chr1:58232778 A AT 1bp_insertion frameshift_variant 1 B30
Chr1:58232778 A AT 1bp_insertion CDS_variant 1 B30
Chr1:58232782 G A EMS_canonical_SNV CDS_variant 1 B30
Chr1:58232783 C T EMS_canonical_SNV CDS_variant 1 B30
Chr1:58232932 C T EMS_canonical_SNV CDS_variant 2 A24,B3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779824.1
722 aa
N
1
361
722
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 672-716 aa PF17123 zf-RING_11 675-702 aa PF13445 zf-RING_UBOX 675-713 aa PF00097 zf-C3HC4 675-715 aa PF13923 zf-C3HC4_2 675-715 aa PF13639 zf-RING_2 675-716 aa PF14634 zf-RING_5 675-717 aa
XP_057779832.1
722 aa
N
1
361
722
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 672-716 aa PF17123 zf-RING_11 675-702 aa PF13445 zf-RING_UBOX 675-713 aa PF00097 zf-C3HC4 675-715 aa PF13923 zf-C3HC4_2 675-715 aa PF13639 zf-RING_2 675-716 aa PF14634 zf-RING_5 675-717 aa
XP_057779837.1
722 aa
N
1
361
722
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 672-716 aa PF17123 zf-RING_11 675-702 aa PF13445 zf-RING_UBOX 675-713 aa PF00097 zf-C3HC4 675-715 aa PF13923 zf-C3HC4_2 675-715 aa PF13639 zf-RING_2 675-716 aa PF14634 zf-RING_5 675-717 aa
XP_057779842.1
722 aa
N
1
361
722
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 672-716 aa PF17123 zf-RING_11 675-702 aa PF13445 zf-RING_UBOX 675-713 aa PF00097 zf-C3HC4 675-715 aa PF13923 zf-C3HC4_2 675-715 aa PF13639 zf-RING_2 675-716 aa PF14634 zf-RING_5 675-717 aa
XP_057779844.1
722 aa
N
1
361
722
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 672-716 aa PF17123 zf-RING_11 675-702 aa PF13445 zf-RING_UBOX 675-713 aa PF00097 zf-C3HC4 675-715 aa PF13923 zf-C3HC4_2 675-715 aa PF13639 zf-RING_2 675-716 aa PF14634 zf-RING_5 675-717 aa
XP_057779849.1
721 aa
N
1
360
721
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 671-715 aa PF17123 zf-RING_11 674-701 aa PF13445 zf-RING_UBOX 674-712 aa PF00097 zf-C3HC4 674-714 aa PF13923 zf-C3HC4_2 674-714 aa PF13639 zf-RING_2 674-715 aa PF14634 zf-RING_5 674-716 aa
XP_057779853.1
721 aa
N
1
360
721
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 671-715 aa PF17123 zf-RING_11 674-701 aa PF13445 zf-RING_UBOX 674-712 aa PF00097 zf-C3HC4 674-714 aa PF13923 zf-C3HC4_2 674-714 aa PF13639 zf-RING_2 674-715 aa PF14634 zf-RING_5 674-716 aa
XP_057779858.1
721 aa
N
1
360
721
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 671-715 aa PF17123 zf-RING_11 674-701 aa PF13445 zf-RING_UBOX 674-712 aa PF00097 zf-C3HC4 674-714 aa PF13923 zf-C3HC4_2 674-714 aa PF13639 zf-RING_2 674-715 aa PF14634 zf-RING_5 674-716 aa
XP_057779861.1
721 aa
N
1
360
721
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 671-715 aa PF17123 zf-RING_11 674-701 aa PF13445 zf-RING_UBOX 674-712 aa PF00097 zf-C3HC4 674-714 aa PF13923 zf-C3HC4_2 674-714 aa PF13639 zf-RING_2 674-715 aa PF14634 zf-RING_5 674-716 aa
XP_057779865.1
721 aa
N
1
360
721
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
C
PF12678 zf-rbx1 671-715 aa PF17123 zf-RING_11 674-701 aa PF13445 zf-RING_UBOX 674-712 aa PF00097 zf-C3HC4 674-714 aa PF13923 zf-C3HC4_2 674-714 aa PF13639 zf-RING_2 674-715 aa PF14634 zf-RING_5 674-716 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057779824.1 Pfam PF12678 zf-rbx1 Domain 672 716 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779824.1 Pfam PF17123 zf-RING_11 Domain 675 702 4.3e-07 30.2 RING-like zinc finger
XP_057779824.1 Pfam PF13445 zf-RING_UBOX Domain 675 713 1.3e-07 32.2 RING-type zinc-finger
XP_057779824.1 Pfam PF00097 zf-C3HC4 Domain 675 715 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779824.1 Pfam PF13923 zf-C3HC4_2 Domain 675 715 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779824.1 Pfam PF13639 zf-RING_2 Domain 675 716 1.1e-13 51.8 Ring finger domain
XP_057779824.1 Pfam PF14634 zf-RING_5 Domain 675 717 9.7e-07 29.4 zinc-RING finger domain
XP_057779832.1 Pfam PF12678 zf-rbx1 Domain 672 716 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779832.1 Pfam PF17123 zf-RING_11 Domain 675 702 4.3e-07 30.2 RING-like zinc finger
XP_057779832.1 Pfam PF13445 zf-RING_UBOX Domain 675 713 1.3e-07 32.2 RING-type zinc-finger
XP_057779832.1 Pfam PF00097 zf-C3HC4 Domain 675 715 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779832.1 Pfam PF13923 zf-C3HC4_2 Domain 675 715 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779832.1 Pfam PF13639 zf-RING_2 Domain 675 716 1.1e-13 51.8 Ring finger domain
XP_057779832.1 Pfam PF14634 zf-RING_5 Domain 675 717 9.7e-07 29.4 zinc-RING finger domain
XP_057779837.1 Pfam PF12678 zf-rbx1 Domain 672 716 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779837.1 Pfam PF17123 zf-RING_11 Domain 675 702 4.3e-07 30.2 RING-like zinc finger
XP_057779837.1 Pfam PF13445 zf-RING_UBOX Domain 675 713 1.3e-07 32.2 RING-type zinc-finger
XP_057779837.1 Pfam PF00097 zf-C3HC4 Domain 675 715 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779837.1 Pfam PF13923 zf-C3HC4_2 Domain 675 715 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779837.1 Pfam PF13639 zf-RING_2 Domain 675 716 1.1e-13 51.8 Ring finger domain
XP_057779837.1 Pfam PF14634 zf-RING_5 Domain 675 717 9.7e-07 29.4 zinc-RING finger domain
XP_057779842.1 Pfam PF12678 zf-rbx1 Domain 672 716 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779842.1 Pfam PF17123 zf-RING_11 Domain 675 702 4.3e-07 30.2 RING-like zinc finger
XP_057779842.1 Pfam PF13445 zf-RING_UBOX Domain 675 713 1.3e-07 32.2 RING-type zinc-finger
XP_057779842.1 Pfam PF00097 zf-C3HC4 Domain 675 715 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779842.1 Pfam PF13923 zf-C3HC4_2 Domain 675 715 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779842.1 Pfam PF13639 zf-RING_2 Domain 675 716 1.1e-13 51.8 Ring finger domain
XP_057779842.1 Pfam PF14634 zf-RING_5 Domain 675 717 9.7e-07 29.4 zinc-RING finger domain
XP_057779844.1 Pfam PF12678 zf-rbx1 Domain 672 716 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779844.1 Pfam PF17123 zf-RING_11 Domain 675 702 4.3e-07 30.2 RING-like zinc finger
XP_057779844.1 Pfam PF13445 zf-RING_UBOX Domain 675 713 1.3e-07 32.2 RING-type zinc-finger
XP_057779844.1 Pfam PF00097 zf-C3HC4 Domain 675 715 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779844.1 Pfam PF13923 zf-C3HC4_2 Domain 675 715 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779844.1 Pfam PF13639 zf-RING_2 Domain 675 716 1.1e-13 51.8 Ring finger domain
XP_057779844.1 Pfam PF14634 zf-RING_5 Domain 675 717 9.7e-07 29.4 zinc-RING finger domain
XP_057779849.1 Pfam PF12678 zf-rbx1 Domain 671 715 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779849.1 Pfam PF17123 zf-RING_11 Domain 674 701 4.3e-07 30.2 RING-like zinc finger
XP_057779849.1 Pfam PF13445 zf-RING_UBOX Domain 674 712 1.3e-07 32.2 RING-type zinc-finger
XP_057779849.1 Pfam PF00097 zf-C3HC4 Domain 674 714 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779849.1 Pfam PF13923 zf-C3HC4_2 Domain 674 714 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779849.1 Pfam PF13639 zf-RING_2 Domain 674 715 1.1e-13 51.8 Ring finger domain
XP_057779849.1 Pfam PF14634 zf-RING_5 Domain 674 716 9.7e-07 29.4 zinc-RING finger domain
XP_057779853.1 Pfam PF12678 zf-rbx1 Domain 671 715 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779853.1 Pfam PF17123 zf-RING_11 Domain 674 701 4.3e-07 30.2 RING-like zinc finger
XP_057779853.1 Pfam PF13445 zf-RING_UBOX Domain 674 712 1.3e-07 32.2 RING-type zinc-finger
XP_057779853.1 Pfam PF00097 zf-C3HC4 Domain 674 714 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779853.1 Pfam PF13923 zf-C3HC4_2 Domain 674 714 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779853.1 Pfam PF13639 zf-RING_2 Domain 674 715 1.1e-13 51.8 Ring finger domain
XP_057779853.1 Pfam PF14634 zf-RING_5 Domain 674 716 9.7e-07 29.4 zinc-RING finger domain
XP_057779858.1 Pfam PF12678 zf-rbx1 Domain 671 715 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779858.1 Pfam PF17123 zf-RING_11 Domain 674 701 4.3e-07 30.2 RING-like zinc finger
XP_057779858.1 Pfam PF13445 zf-RING_UBOX Domain 674 712 1.3e-07 32.2 RING-type zinc-finger
XP_057779858.1 Pfam PF00097 zf-C3HC4 Domain 674 714 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779858.1 Pfam PF13923 zf-C3HC4_2 Domain 674 714 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779858.1 Pfam PF13639 zf-RING_2 Domain 674 715 1.1e-13 51.8 Ring finger domain
XP_057779858.1 Pfam PF14634 zf-RING_5 Domain 674 716 9.7e-07 29.4 zinc-RING finger domain
XP_057779861.1 Pfam PF12678 zf-rbx1 Domain 671 715 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779861.1 Pfam PF17123 zf-RING_11 Domain 674 701 4.3e-07 30.2 RING-like zinc finger
XP_057779861.1 Pfam PF13445 zf-RING_UBOX Domain 674 712 1.3e-07 32.2 RING-type zinc-finger
XP_057779861.1 Pfam PF00097 zf-C3HC4 Domain 674 714 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779861.1 Pfam PF13923 zf-C3HC4_2 Domain 674 714 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779861.1 Pfam PF13639 zf-RING_2 Domain 674 715 1.1e-13 51.8 Ring finger domain
XP_057779861.1 Pfam PF14634 zf-RING_5 Domain 674 716 9.7e-07 29.4 zinc-RING finger domain
XP_057779865.1 Pfam PF12678 zf-rbx1 Domain 671 715 4.6e-09 37.1 RING-H2 zinc finger domain
XP_057779865.1 Pfam PF17123 zf-RING_11 Domain 674 701 4.3e-07 30.2 RING-like zinc finger
XP_057779865.1 Pfam PF13445 zf-RING_UBOX Domain 674 712 1.3e-07 32.2 RING-type zinc-finger
XP_057779865.1 Pfam PF00097 zf-C3HC4 Domain 674 714 3.7e-09 37.0 Zinc finger, C3HC4 type (RING finger)
XP_057779865.1 Pfam PF13923 zf-C3HC4_2 Domain 674 714 5.5e-10 39.6 Zinc finger, C3HC4 type (RING finger)
XP_057779865.1 Pfam PF13639 zf-RING_2 Domain 674 715 1.1e-13 51.8 Ring finger domain
XP_057779865.1 Pfam PF14634 zf-RING_5 Domain 674 716 9.7e-07 29.4 zinc-RING finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA
XM_057923861.1
GAATGCAAATTGGAAAATGATTTTTGTGAGCCTCATTACAGCAACACATGACCCCATTATAATAACACCGCGTTGCAATCTTTATTATCTTTTTCCTCCTTTTTATTCTTTTCCTTGCCACAATCTTGTTTTCACCTCATAACTTTAATCTAATTTCGTTTTCCATCCCATCACTGGAAACTGCTACGAAGAAAAAGAGGGAGGTATCGGCTATAGATCTACCGCCTTACCTGCTTCTCTTTGGCTGATTCTCTCAGAAC...
XM_057923841.1
AATCTTGTTTTCACCTCATAACTTTAATCTAATTTCGTTTTCCATCCCATCACTGGAAACTGCTACGAAGAAAAAGAGGGAGGTATCATGACTTTTCTCATTTATATGGGCATTGATGAAAATTGAAAAGTTTCTCCTATTATTATTTCGTGTTCAAATTCTGTCGCCTGTGTGAAATTGTGGCCCTGTGGGCTTATTGGTGGCGTGTTTTGAGTAAATTATAGATTAAAGATTACTGCCCCCATTAATCCCTCCCACCC...

CDS

10 records

下载 CDS FASTA
LOC130998424
ATGCAAGGGCAGAGGAATTCTGTCAGTACATTGCCCGAAAATCTAAGTTTTGATCATGGTTCTACGTCAAGTGATGCTGGCATGGATTCCCAAGTGCCCTGGAATAATATGCAGAATTCTGCAGAAGCTCGACTACCAGAGTACAAAATTGCGTCAAGTGATCCCGATACTCAGTATTCACATCATATAGCGCACAGTCAGTGGAGTTTAGGTGAAACTAGTTCTGGTGCTGCACGAAGTCAATCCGACCGTAGTGAGAG...
LOC130998424
ATGCAAGGGCAGAGGAATTCTGTCAGTACATTGCCCGAAAATCTAAGTTTTGATCATGGTTCTACGTCAAGTGATGCTGGCATGGATTCCCAAGTGCCCTGGAATAATATGCAGAATTCTGCAGAAGCTCGACTACCAGAGTACAAAATTGCGTCAAGTGATCCCGATACTCAGTATTCACATCATATAGCGCACAGTCAGTGGAGTTTAGGTGAAACTAGTTCTGGTGCTGCACGAAGTCAATCCGACCGTAGTGAGAG...

Protein

10 records

下载 Protein FASTA
XP_057779824.1
MQGQRNSVSTLPENLSFDHGSTSSDAGMDSQVPWNNMQNSAEARLPEYKIASSDPDTQYSHHIAHSQWSLGETSSGAARSQSDRSERKREHRWSVPSRAALDLEECQLESSNILPLDNVVVDGQGNQTSSGSSLLQIPGPDSISQDLNMCSEFGDQEYDDCQVIEHPNRHISVGSSNEKMPSTGSSSDTLGMSSGCGGYVMEDSDYRPGRSLDGRRLSCKRKALDVQVGQSSGAGSSNCFEHAERSQWHDVTSAPAQISA...
XP_057779832.1
MQGQRNSVSTLPENLSFDHGSTSSDAGMDSQVPWNNMQNSAEARLPEYKIASSDPDTQYSHHIAHSQWSLGETSSGAARSQSDRSERKREHRWSVPSRAALDLEECQLESSNILPLDNVVVDGQGNQTSSGSSLLQIPGPDSISQDLNMCSEFGDQEYDDCQVIEHPNRHISVGSSNEKMPSTGSSSDTLGMSSGCGGYVMEDSDYRPGRSLDGRRLSCKRKALDVQVGQSSGAGSSNCFEHAERSQWHDVTSAPAQISA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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