Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003992`

染色体: Chr01 坐标: 58345415-58348719 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003992`
名称	SmilChr01G003992
描述	acyl-CoA-binding domain-containing protein 3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58345415 - 58348719 / `-`

ID 对照

NCBI Gene ID	`LOC130998519`
GeneID	`130998519`
locus_tag	`-`
NCBI Name	`LOC130998519`
原始查询	`SmilChr01G003992`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acyl-CoA-binding domain-containing protein 3-like
产物	acyl-CoA-binding domain-containing protein 3-like
Arabidopsis	`AT4G24230` (ACBP3) acyl-CoA-binding domain 3 [Source:NCBI gene (formerly Entrezgene);Acc:828524] identity=29.6; qcov=1.1; evalue=1.62e-26; confidence=low
Rice	`Os03g0243600` (OsACBP5) - identity=44.6; qcov=0.262; evalue=3.7e-12; confidence=weak
GO	GO:0000062 (fatty-acyl-CoA binding); GO:0006631 (fatty acid metabolic process)
KEGG	-
Pfam	PF00887 (ACBP)
InterPro	-
eggNOG	-
NR	GeneID:130998519

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.60000	`XP_057779925.1`
2	Nucleus membrane	核膜	0.20000	`XP_057779925.1`
3	Mitochondrion	线粒体	0.20000	`XP_057779929.1`
4	Mitochondrion membrane	线粒体膜	0.20000	`XP_057779929.1`
5	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057779925.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58345780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:58346575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,C21
`Chr1:58346958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B18,B23,B67,C14,C22
`Chr1:58347681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D4,D7
`Chr1:58347780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr1:58348105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:58348135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B11,B69,C82
`Chr1:58348199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B125,C77,C79
`Chr1:58348207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,C33,C53,D2
`Chr1:58348333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:58348355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779925.1

351 aa

176

351

ACBP

PF00887 ACBP 211-292 aa

XP_057779929.1

282 aa

141

282

ACBP

PF00887 ACBP 210-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779925.1`	Pfam	`PF00887`	ACBP	Domain	211	292	1.4e-20	73.9	Acyl CoA binding protein
`XP_057779929.1`	Pfam	`PF00887`	ACBP	Domain	210	270	2.8e-08	34.5	Acyl CoA binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009093281.1
AGAAAGAAAAAGGCAAAGAATATGCTTTGCTCTGCTCTGCAAACATCCTTCCTTGAAATTTAAATAATGCACAAAACAGTAGTAAATTATGAAAGTTAAAATGCTTTTAGTAGTTTAGTATCGGTTGCTATGATATGAATGCTTCTTGTTACGATAGTCCATCGTTATCTTTATGCCCTTTTGGTGTCATTCTTTGAAACTTTCACGAGTTTTTCGTGCCCATCTTTCCTTTTTCTTTTTCTCCCTCTTCTGACAATCTT...

XR_009093282.1
AGAAAGAAAAAGGCAAAGAATATGCTTTGCTCTGCTCTGCAAACATCCTTCCTTGAAATTTAAATAATGCACAAAACAGTAGTAAATTATGAAAGTTAAAATGCTTTTAGTAGTTTAGTATCGGTTGCTATGATATGAATGCTTCTTGTTACGATAGTCCATCGTTATCTTTATGCCCTTTTGGTGTCATTCTTTGAAACTTTCACGAGTTTTTCGTGCCCATCTTTCCTTTTTCTTTTTCTCCCTCTTCTGACAATCTT...

CDS

2 records

下载 CDS FASTA

LOC130998519
ATGGATTTTTTGCAAGAACCGACTTTTACTGCTTTTCTAGCTCTGGTTTTATCTTTTCTTGTTGCAAAGATTGTTGCTTTTGTTGTTTCTAACTCAGCTCCTGATGCTGATTCTGTTGTTAGTGAAGGTGTAGTGAAAGAGGTGAGTTTGGAGAGGGAATTGGCGGTCAGGAGCGGGAAGGGGGAAAAGAGAGTGAAGTTTATGGATGATGTTGTGATCAGAAGGATTGATCGTTATGAGGGGTCTGAAAATCTTGTGTT...

Protein

2 records

下载 Protein FASTA

XP_057779925.1
MDFLQEPTFTAFLALVLSFLVAKIVAFVVSNSAPDADSVVSEGVVKEVSLERELAVRSGKGEKRVKFMDDVVIRRIDRYEGSENLVLLDDVEEKSVDESSGQMVDQFGGDGDYGVRKSEEECYDEREMDDAEVGGSGKTEMLFEEEAGGDRDGVGSENVEALVTSGVKSVSDEREGNEEMVAGDVVLEEEKMRDESDDDWEGVERSELEKCFAEAVNYVECGGKGKEVDRLVRLGSDVQMQLYGLHKIALEGPCLEPQPM...

XP_057779929.1
MDFLQEPTFTAFLALVLSFLVAKIVAFVVSNSAPDADSVVSEGVVKEVSLERELAVRSGKGEKRVKFMDDVVIRRIDRYEGSENLVLLDDVEEKSVDESSGQMVDQFGGDGDYGVRKSEEECYDEREMDDAEVGGSGKTEMLFEEEAGGDRDGVGSENVEALVTSGVKSVSDEREGNEEMVAGDVVLEEEKMRDESDDDWEGVERSELEKCFAEAVNYVECGGKGKEVDRLVRLGSDVQMQLYGLHKIALEGPCLEPQPM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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