Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004002`

染色体: Chr01 坐标: 58412610-58415919 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004002`
名称	SmilChr01G004002
描述	adenine phosphoribosyltransferase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58412610 - 58415919 / `+`

ID 对照

NCBI Gene ID	`LOC130998626`
GeneID	`130998626`
locus_tag	`-`
NCBI Name	`LOC130998626`
原始查询	`SmilChr01G004002`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenine phosphoribosyltransferase 1-like
产物	adenine phosphoribosyltransferase 1-like
Arabidopsis	`AT1G27450` (APT1) adenine phosphoribosyl transferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:839636] identity=66.8; qcov=0.78; evalue=3.4e-77; confidence=high
Rice	`Os12g0589100` (OsAPT1) - identity=64.3; qcov=0.737; evalue=7.88e-70; confidence=high
GO	GO:0003999 (adenine phosphoribosyltransferase activity); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006168 (adenine salvage)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00156 (Pribosyltran)
InterPro	-
eggNOG	-
NR	GeneID:130998626

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057780024.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057780024.1`
3	Nucleus	细胞核	0.00000	`XP_057780024.1`
4	Chromosome	染色体	0.00000	`XP_057780024.1`
5	Centromere	着丝粒	0.00000	`XP_057780024.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58412851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B132
`Chr1:58412859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,C79
`Chr1:58413069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B136,C21,D10,D4
`Chr1:58414156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr1:58414902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr1:58414907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B136,C21,D10,D4
`Chr1:58414936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:58415223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr1:58415254`	`GTA`	`G`	2bp_deletion	frameshift_variant	7	A10,B136,C21,C86,D10,D11,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780024.1

270 aa

135

270

Pribosyltran

PF00156 Pribosyltran 119-240 aa

XP_057780027.1

263 aa

132

263

Pribosyltran

PF00156 Pribosyltran 119-252 aa

XP_057780032.1

239 aa

120

239

Pribosyltran

PF00156 Pribosyltran 152-209 aa

XP_057780037.1

232 aa

116

232

Pribosyltran

PF00156 Pribosyltran 152-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780024.1`	Pfam	`PF00156`	Pribosyltran	Domain	119	240	1e-18	67.9	Phosphoribosyl transferase domain
`XP_057780027.1`	Pfam	`PF00156`	Pribosyltran	Domain	119	252	2.7e-19	69.8	Phosphoribosyl transferase domain
`XP_057780032.1`	Pfam	`PF00156`	Pribosyltran	Domain	152	209	3.9e-12	46.5	Phosphoribosyl transferase domain
`XP_057780037.1`	Pfam	`PF00156`	Pribosyltran	Domain	152	221	9.8e-13	48.4	Phosphoribosyl transferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057924044.1
AAACTATTTTTCTACGTCCACAATAGAATAAAGAAATTTGGAAACAAAAACCACTGAAGTCTTGCGTTTTTTGTAACAACACGACACAAACACTGAAACAGTATTTTCTCATGTTAGAGAAAGTTGATTTGGATAAAGATTCTGATATCCATAGATGTTTATATCATCATATGTGATTATTATTCTACTAAACCCCAACTTTCCACATTATACCCTTTTAAAACACTGTGATGTACGCTCTCTCTCAGGCTCAGCCGTCG...

XM_057924041.1
AATAAAGAAATTTGGAAACAAAAACCACTGAAGTCTTGCGTTTTTTGTAACAACACGACACAAACACTGAAACAGTATTTTCTCATGTTAGAGAAAGTTGATTTGGATAAAGATTCTGATATCCATAGATGTTTATATCATCATATGTGATTATTATTCTACTAAACCCCAACTTTCCACATTATACCCTTTTAAAACACTGTGATGTACGCTCTCTCTCAGGCTCAGCCGTCGCCCCTCAAAATCCACGAGGCTAAAAT...

CDS

4 records

下载 CDS FASTA

LOC130998626
ATGTACGCTCTCTCTCAGGCTCAGCCGTCGCCCCTCAAAATCCACGAGGCTAAAATAGTCTCGTCGCTGCGCACTGCCATTTCCCTCAAATCAGATTTCTTCTCACCTAACACTGCAGCAGCAGCAGTCACTACCACTGCGCGGAGGAGGAGCAGCACAAGCGATCCGCAGATCTACGTTCGGTCTTCTGGTGGCGCAACCCTACCGGAACGGCGGCGACTGAGCGGAGCAGCCATGGCCACATCGAACGTCGACGGCAC...

Protein

4 records

下载 Protein FASTA

XP_057780024.1
MYALSQAQPSPLKIHEAKIVSSLRTAISLKSDFFSPNTAAAAVTTTARRRSSTSDPQIYVRSSGGATLPERRRLSGAAMATSNVDGTDDRIARIASTIRVIPDFPKPGIMFQDITTLLLDHKAFKDTIDLFVERYKDQNISVIAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDTMEMHVGAVQPGERAVIVDDLIATGGTLNAAIRLLGRVGVTVVECACVIELKELKVYITPLQTKVTCIFI...

XP_057780027.1
MYALSQAQPSPLKIHEAKIVSSLRTAISLKSDFFSPNTAAAAVTTTARRRSSTSDPQIYVRSSGGATLPERRRLSGAAMATSNVDGTDDRIARIASTIRVIPDFPKPGIMFQDITTLLLDHKAFKDTIDLFVERYKDQNISVIAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDTMEMHVGAVQPGERAVIVDDLIATGGTLNAAIRLLGRVGVTVVECACVIELKELKGREKLGDKALFVLVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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