Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004012`

染色体: Chr01 坐标: 58537138-58542141 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004012`
名称	SmilChr01G004012
描述	RNA-binding protein BRN1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58537138 - 58542141 / `-`

ID 对照

NCBI Gene ID	`LOC130998690`
GeneID	`130998690`
locus_tag	`-`
NCBI Name	`LOC130998690`
原始查询	`SmilChr01G004012`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding protein BRN1-like
产物	RNA-binding protein BRN1-like
Arabidopsis	`AT4G03110` (RBP-DR1) RNA-binding protein-defense related 1 [Source:NCBI gene (formerly Entrezgene);Acc:828090] identity=63; qcov=0.979; evalue=0; confidence=high
Rice	`Os01g0938200` - identity=64.7; qcov=0.982; evalue=0; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:1990904 (ribonucleoprotein complex)
KEGG	-
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:130998690

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057780085.1`
2	Nucleus	细胞核	0.80000	`XP_057780085.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057780093.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057780093.1`
5	Cytosol	细胞质基质	0.40000	`XP_057780085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58539056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B130
`Chr1:58539462`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B30,C19
`Chr1:58539462`	`AG`	`A`	1bp_deletion	CDS_variant	2	B30,C19
`Chr1:58539930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:58540617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr1:58541183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780085.1

459 aa

230

459

RRM_1

PF00076 RRM_1 9-72 aa PF00076 RRM_1 97-163 aa PF00076 RRM_1 342-384 aa PF00076 RRM_1 410-438 aa

XP_057780093.1

433 aa

216

433

RRM_1

PF00076 RRM_1 9-72 aa PF00076 RRM_1 97-163 aa PF00076 RRM_1 342-412 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780085.1`	Pfam	`PF00076`	RRM_1	Domain	9	72	2.4e-48	162.6	RNA recognition motif
`XP_057780085.1`	Pfam	`PF00076`	RRM_1	Domain	97	163	2.4e-48	162.6	RNA recognition motif
`XP_057780085.1`	Pfam	`PF00076`	RRM_1	Domain	342	384	2.4e-48	162.6	RNA recognition motif
`XP_057780085.1`	Pfam	`PF00076`	RRM_1	Domain	410	438	2.4e-48	162.6	RNA recognition motif
`XP_057780093.1`	Pfam	`PF00076`	RRM_1	Domain	9	72	4.6e-53	177.7	RNA recognition motif
`XP_057780093.1`	Pfam	`PF00076`	RRM_1	Domain	97	163	4.6e-53	177.7	RNA recognition motif
`XP_057780093.1`	Pfam	`PF00076`	RRM_1	Domain	342	412	4.6e-53	177.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009093293.1
AGATTTTCCTTCCAAGACAACTCAGAACAAAAAAGGAAAACACTTGGAAAATAATCACAGATCACCGTTAAGCATTTTCTCAAACTGGAAGAGAGAGAGACTTTTAGAGAGAGAAAGTACTTATTTTGTGGTGGTAATGGCGGAAGGAGAGAGCGTGAAGCTGTTCGTAGGCCAAGTACCAAAGCAGATGACGGAGGTGCAGCTCCTCGCAGTGTTCAGAGAGTTCGCGCTCGTCGACGAGGTCAAAATAATCAGAGACA...

XR_009093292.1
AGATTTTCCTTCCAAGACAACTCAGAACAAAAAAGGAAAACACTTGGAAAATAATCACAGATCACCGTTAAGCATTTTCTCAAACTGGAAGAGAGAGAGACTTTTAGAGAGAGAAAGTACTTATTTTGTGGTGGTAATGGCGGAAGGAGAGAGCGTGAAGCTGTTCGTAGGCCAAGTACCAAAGCAGATGACGGAGGTGCAGCTCCTCGCAGTGTTCAGAGAGTTCGCGCTCGTCGACGAGGTCAAAATAATCAGAGACA...

CDS

2 records

下载 CDS FASTA

LOC130998690
ATGGCGGAAGGAGAGAGCGTGAAGCTGTTCGTAGGCCAAGTACCAAAGCAGATGACGGAGGTGCAGCTCCTCGCAGTGTTCAGAGAGTTCGCGCTCGTCGACGAGGTCAAAATAATCAGAGACAAGGAGACGCGCGCGTCGAGAGGATGTTGTTTCGTCATATGTCCGTCGAGAGAGGAAGCAGACAAGGCTGTAAACGCGTGCCATGAGAAGATTACGCTGCCTGGGGCATCTAGGCTTTTGCAAATGAAGTATGCTGA...

Protein

2 records

下载 Protein FASTA

XP_057780085.1
MAEGESVKLFVGQVPKQMTEVQLLAVFREFALVDEVKIIRDKETRASRGCCFVICPSREEADKAVNACHEKITLPGASRLLQMKYADGELERLEHKLFVGMLPKTVSDAEVSALFSEYGTIKDLQILRGSGQTSKGCAFMKFETKEQALAAIEALNGKHKMEGSSIPLVVKWADTEKERQTRKVRKALLQASTLQIASAQQSVYGALPMSYVPAYNGYGYQTPGPYGFVRYRLPELQNRPNFPSLMPSTNHGHAIRGAIP...

XP_057780093.1
MAEGESVKLFVGQVPKQMTEVQLLAVFREFALVDEVKIIRDKETRASRGCCFVICPSREEADKAVNACHEKITLPGASRLLQMKYADGELERLEHKLFVGMLPKTVSDAEVSALFSEYGTIKDLQILRGSGQTSKGCAFMKFETKEQALAAIEALNGKHKMEGSSIPLVVKWADTEKERQTRKVRKALLQASTLQIASAQQSVYGALPMSYVPAYNGYGYQTPGPYGFVRYRLPELQNRPNFPSLMPSTNHGHAIRGAIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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