Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004019`

染色体: Chr01 坐标: 58578309-58584765 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004019`
名称	SmilChr01G004019
描述	sodium/hydrogen exchanger 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58578309 - 58584765 / `-`

ID 对照

NCBI Gene ID	`LOC130998762`
GeneID	`130998762`
locus_tag	`-`
NCBI Name	`LOC130998762`
原始查询	`SmilChr01G004019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sodium/hydrogen exchanger 1-like
产物	sodium/hydrogen exchanger 1-like
Arabidopsis	`AT3G05030` (NHX2) sodium hydrogen exchanger 2 [Source:NCBI gene (formerly Entrezgene);Acc:819665] identity=68; qcov=0.978; evalue=0; confidence=high
Rice	`Os07g0666900` (NHX1) - identity=70.8; qcov=0.974; evalue=0; confidence=high
GO	GO:0006814 (sodium ion transport); GO:0006885 (regulation of pH); GO:0015385 (sodium:proton antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF00999 (Na_H_Exchanger)
InterPro	-
eggNOG	-
NR	GeneID:130998762

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057780154.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057780154.1`
3	Nucleus	细胞核	0.00000	`XP_057780154.1`
4	Chromosome	染色体	0.00000	`XP_057780154.1`
5	Centromere	着丝粒	0.00000	`XP_057780154.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58578649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B22,B41
`Chr1:58578650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B53
`Chr1:58578690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B30
`Chr1:58578691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:58578826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,B68
`Chr1:58578868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:58579463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B129,C44,C50
`Chr1:58579608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr1:58579929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:58580016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:58580039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,B73,C62
`Chr1:58581609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780154.1

541 aa

270

541

Na_H_Exchanger

PF00999 Na_H_Exchanger 39-445 aa

XP_057780159.1

541 aa

270

541

Na_H_Exchanger

PF00999 Na_H_Exchanger 39-445 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780154.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	39	445	6.3e-58	197.1	Sodium/hydrogen exchanger, transmembrane
`XP_057780159.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	39	445	6.3e-58	197.1	Sodium/hydrogen exchanger, transmembrane

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924171.1
AGCTGAGGTTTTACTTTCAACTCCATGATATTTTGCTTTAACTGGAGTTCTTCTCCAATTCAATCTCTTACACCATAAGAAATCGTAATACAACACAAATTGCTATAAAAACCTTAGACTTCATTAGGCTTCAAATTTCAGGCATTATCGGCTGAGAAAACTCAAAAGGGAAAAGCTATGAGTGTTGGTTTAGGTTCTGTGTTGATGAACAAATTAGGGGGATTCGCCTCCAGTGATCCTGATCAGGTTTCAGTTAGTTC...

XM_057924176.1
TTTACTTTCAACTCCATGATATTTTGCTTTAACTGGAGTTCTTCTCCAATTCAATCTCTTACACCATAAGAAATCGTAATACAACACAAATTGCTATAAAAACCTTAGACTTCATTAGGCTTCAAATTTCAGGCATTATCGGCTGAGAAACCTCACAAGGGAAAATTGGTGCATTGTTTTGTTTACTTCTGAAGCAGAAAACTCAAAAGGGAAAAGCTATGAGTGTTGGTTTAGGTTCTGTGTTGATGAACAAATTAGGG...

CDS

2 records

下载 CDS FASTA

LOC130998762
ATGAGTGTTGGTTTAGGTTCTGTGTTGATGAACAAATTAGGGGGATTCGCCTCCAGTGATCCTGATCAGGTTTCAGTTAGTTCCATTACACTGTTCGTCACCCTCCTCTGTATCTCCGTTGTGCTCGGCCATCTACTCGAAGAAAATAAATGGATTAATGAGTCTGTTAATGCTCTTTTCATTGGTTTGGGTACTGGTACCATTCTATTGCTTGCTACTAATGGAGTGAGCTCGCGGATCTTGGAATTCAACGAGGAGCT...

Protein

2 records

下载 Protein FASTA

XP_057780154.1
MSVGLGSVLMNKLGGFASSDPDQVSVSSITLFVTLLCISVVLGHLLEENKWINESVNALFIGLGTGTILLLATNGVSSRILEFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTMISFCIISFGAKLLFDQLNFGYLELQDYLAIGAIFSATDSVCTLQVLNQDETPFLHSLVFGEGVVNDATSVVLFNAIQKFDLSEIDSTMAFTFIGNFFYLFITSTLLGVLMGLLSAYIIRKLYFGRHSTDREVALM...

XP_057780159.1
MSVGLGSVLMNKLGGFASSDPDQVSVSSITLFVTLLCISVVLGHLLEENKWINESVNALFIGLGTGTILLLATNGVSSRILEFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTMISFCIISFGAKLLFDQLNFGYLELQDYLAIGAIFSATDSVCTLQVLNQDETPFLHSLVFGEGVVNDATSVVLFNAIQKFDLSEIDSTMAFTFIGNFFYLFITSTLLGVLMGLLSAYIIRKLYFGRHSTDREVALM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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