Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004022`

染色体: Chr01 坐标: 58632204-58636130 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004022`
名称	SmilChr01G004022
描述	protein TRANSPORT INHIBITOR RESPONSE 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58632204 - 58636130 / `+`

ID 对照

NCBI Gene ID	`LOC130998790`
GeneID	`130998790`
locus_tag	`-`
NCBI Name	`LOC130998790`
原始查询	`SmilChr01G004022`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein TRANSPORT INHIBITOR RESPONSE 1-like
产物	protein TRANSPORT INHIBITOR RESPONSE 1-like
Arabidopsis	`AT3G62980` (TIR1) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825473] identity=79.2; qcov=0.976; evalue=0; confidence=high
Rice	`Os04g0395600` (OsAFB2) - identity=61; qcov=0.973; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF18511 (F-box_5); PF18791 (Transp_inhibit)
InterPro	-
eggNOG	-
NR	GeneID:130998790

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057780182.1`
2	Nucleus	细胞核	0.60000	`XP_057780182.1`
3	Cytosol	细胞质基质	0.60000	`XP_057780182.1`
4	Chromosome	染色体	0.00000	`XP_057780182.1`
5	Centromere	着丝粒	0.00000	`XP_057780182.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58632412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr1:58632478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:58632503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr1:58632541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:58634250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:58634384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:58635109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:58635284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B125
`Chr1:58635289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B65
`Chr1:58635499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B22,B41
`Chr1:58635614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,C28,C31
`Chr1:58635627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B35,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780182.1

590 aa

295

590

F-box_5

F-box

F-box-like

Transp_inhibit

PF18511 F-box_5 3-42 aa PF00646 F-box 5-42 aa PF12937 F-box-like 6-36 aa PF18791 Transp_inhibit 62-108 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780182.1`	Pfam	`PF18511`	F-box_5	Domain	3	42	3.1e-18	65.7	F-box
`XP_057780182.1`	Pfam	`PF00646`	F-box	Domain	5	42	0.00018	22.0	F-box domain
`XP_057780182.1`	Pfam	`PF12937`	F-box-like	Domain	6	36	1.7e-08	34.8	F-box-like
`XP_057780182.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	62	108	5.3e-26	90.6	Transport inhibitor response 1 protein domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924199.1
ATATAAAAACAGTTGGCCCAAATAACCTTATCTCTTCACTTCTTTACAATATTAGCTTTTCCTCTCGCTCTCTCTCTACACTCATCGCTTTCCCTCTCTCTCTCTACTCTCTCCCTCTCTCTCTACTCGACTTCGCCATTGTAGGAATCTTTCAGATCCGGAGCTAAAGCCACCGGCTCGTCTCTCTCATGGCGTACTCGTTTCCGGAGGAGGTTCTGGAGCACGTTTTCTCTTTCCTGAGCTCCGACAGGGACCGGAAC...

CDS

1 records

下载 CDS FASTA

LOC130998790
ATGGCGTACTCGTTTCCGGAGGAGGTTCTGGAGCACGTTTTCTCTTTCCTGAGCTCCGACAGGGACCGGAACGCGGTGGCGCTGGTGTGCCGGTCGTGGTACGAGATCGAGCGGTGGTGCCGCCGCCGAGTGTTCGTCGGGAACTGCTACGCGGTGTCACCGGAGATAATGATTCGGCGGTTCCCGGAGGTGCGGGTGGTGGAGATGAAGGGGAAGCCTCATTTCGCGGATTTCAACCTCGTGCCGGAGGGCTGGGGCGG...

Protein

1 records

下载 Protein FASTA

XP_057780182.1
MAYSFPEEVLEHVFSFLSSDRDRNAVALVCRSWYEIERWCRRRVFVGNCYAVSPEIMIRRFPEVRVVEMKGKPHFADFNLVPEGWGGYVQPWIRAMAASYPSLEEIRLKRMVVTDESLELIARSFKNFKVLVLSSCEGFTTDGLASIAANCRNLRELDLRESEVEDLSGHWLSHFPDNCTSLVSLNMSCLGSEVSFSALERLVGRCPNLRTLQLNRAVPLEKLPNLLHRAPQLVEFGTGAYSAEIRPDIYSNLAEAFSVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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