Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004026`

染色体: Chr01 坐标: 58667914-58670039 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004026`
名称	SmilChr01G004026
描述	LRR receptor-like serine/threonine-protein kinase ERL1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58667914 - 58670039 / `-`

ID 对照

NCBI Gene ID	`LOC130998822`
GeneID	`130998822`
locus_tag	`-`
NCBI Name	`LOC130998822`
原始查询	`SmilChr01G004026`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase ERL1
产物	LRR receptor-like serine/threonine-protein kinase ERL1
Arabidopsis	`AT1G03440` (AT1G03440) Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:839504] identity=68.3; qcov=1; evalue=0; confidence=high
Rice	`Os05g0406800` - identity=60.8; qcov=0.955; evalue=5.7e-167; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130998822

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.60000	`XP_057780213.1`
2	Cell membrane	细胞膜	0.40000	`XP_057780213.1`
3	Nucleus	细胞核	0.00000	`XP_057780213.1`
4	Chromosome	染色体	0.00000	`XP_057780213.1`
5	Centromere	着丝粒	0.00000	`XP_057780213.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58668118`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B104
`Chr1:58668118`	`A`	`AT`	1bp_insertion	CDS_variant	1	B104
`Chr1:58668750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,D11
`Chr1:58668804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B115,B125,B20,C54
`Chr1:58668957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:58669052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:58669061`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,C61,C78
`Chr1:58669260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr1:58669263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr1:58669303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B35,B56,B96,C22
`Chr1:58669304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,C25,D10
`Chr1:58669348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B125

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780213.1

416 aa

208

416

LRRNT_2

LRR_1

LRR_6

LRR_8

LRR_1

PF08263 LRRNT_2 29-69 aa PF00560 LRR_1 149-169 aa PF13516 LRR_6 150-162 aa PF13855 LRR_8 195-253 aa PF13855 LRR_8 217-276 aa PF00560 LRR_1 218-240 aa PF00560 LRR_1 242-263 aa

XP_057780220.1

398 aa

199

398

LRRNT_2

LRR_1

LRR_6

LRR_8

LRR_1

PF08263 LRRNT_2 29-69 aa PF00560 LRR_1 149-169 aa PF13516 LRR_6 150-162 aa PF13855 LRR_8 195-253 aa PF13855 LRR_8 217-276 aa PF00560 LRR_1 218-240 aa PF00560 LRR_1 242-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780213.1`	Pfam	`PF08263`	LRRNT_2	Family	29	69	4e-09	37.3	Leucine rich repeat N-terminal domain
`XP_057780213.1`	Pfam	`PF00560`	LRR_1	Repeat	149	169	4.3e-25	83.1	Leucine Rich Repeat
`XP_057780213.1`	Pfam	`PF13516`	LRR_6	Repeat	150	162	1.3e-07	31.8	Leucine Rich repeat
`XP_057780213.1`	Pfam	`PF13855`	LRR_8	Repeat	195	253	1.1e-20	73.8	Leucine rich repeat
`XP_057780213.1`	Pfam	`PF13855`	LRR_8	Repeat	217	276	1.1e-20	73.8	Leucine rich repeat
`XP_057780213.1`	Pfam	`PF00560`	LRR_1	Repeat	218	240	4.3e-25	83.1	Leucine Rich Repeat
`XP_057780213.1`	Pfam	`PF00560`	LRR_1	Repeat	242	263	4.3e-25	83.1	Leucine Rich Repeat
`XP_057780220.1`	Pfam	`PF08263`	LRRNT_2	Family	29	69	3.7e-09	37.4	Leucine rich repeat N-terminal domain
`XP_057780220.1`	Pfam	`PF00560`	LRR_1	Repeat	149	169	2.5e-25	83.8	Leucine Rich Repeat
`XP_057780220.1`	Pfam	`PF13516`	LRR_6	Repeat	150	162	9.7e-08	32.2	Leucine Rich repeat
`XP_057780220.1`	Pfam	`PF13855`	LRR_8	Repeat	195	253	7.1e-21	74.5	Leucine rich repeat
`XP_057780220.1`	Pfam	`PF13855`	LRR_8	Repeat	217	276	7.1e-21	74.5	Leucine rich repeat
`XP_057780220.1`	Pfam	`PF00560`	LRR_1	Repeat	218	240	2.5e-25	83.8	Leucine Rich Repeat
`XP_057780220.1`	Pfam	`PF00560`	LRR_1	Repeat	242	263	2.5e-25	83.8	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924230.1
ATTGCCGCAAAAACGCACAACACACAGTAGAGAGAGAAAATAACGACAACATAAACCTGCAAGTAGAGAGAGACTGAGAGAGAACAACGACAACAACAAGCTGCAGCTCATTTCCATTTCCTCTCCTTCTCCCAAACCATCGAAAAACCCCACCATTTTCTTGATTCTTCAATAATTGATCATCTCTCTCTCTCTCTCTCTCCCCGCTCAAGTAGAGAGAGAAACACTACGCCTACAACGATATATCTGCAGTGCATTCC...

XM_057924237.1
TTGCCGCAAAAACGCACAACACACAGTAGAGAGAGAAAATAACGACAACATAAACCTGCAAGTAGAGAGAGACTGAGAGAGAACAACGACAACAACAAGCTGCAGCTCATTTCCATTTCCTCTCCTTCTCCCAAACCATCGAAAAACCCCACCATTTTCTTGATTCTTCAATAATTGATCATCTCTCTCTCTCTCTCTCTCCCCGCTCAAGTAGAGAGAGAAACACTACGCCTACAACGATATATCTGCAGTGCATTCCA...

CDS

2 records

下载 CDS FASTA

LOC130998822
ATGCACACTGCTTATCTCTCTACATTTTGGGCATGTCTGATTTCGCTACTGCAATGCGGGCTTCTGGCGCATGCATTGCTGGACCCGAATGATTTTTTGGCATTACAATCGGTCAGAAAAAGCTTGAACGATTTGCCGGGCTCCAACTATTTCACTTCGTGGGATTTCACAGCGGATCCCTGCGGTTTTTCCGGCGTCTTCTGCGACGGCGACCGCGTGATCGCCCTCAACCTTGGCGACCCCCGTGCTGGGTCGCCCGG...

Protein

2 records

下载 Protein FASTA

XP_057780213.1
MHTAYLSTFWACLISLLQCGLLAHALLDPNDFLALQSVRKSLNDLPGSNYFTSWDFTADPCGFSGVFCDGDRVIALNLGDPRAGSPGLSGRIDPAIGKLSALAELTIVPGRVVGSLPRTLSQLKSLRFLAISRNFISGDIPAGLGQLRRLQTLDLSFNQLTGAIPRPVGALPALANVVLCNNHLTGSIPPFVSQELARLDLKHNNLAGSISSLGFPPSLQYISLSSNRLSGSLDRVFSGLNKLSYLDLSMNQLTGSIPVE...

XP_057780220.1
MHTAYLSTFWACLISLLQCGLLAHALLDPNDFLALQSVRKSLNDLPGSNYFTSWDFTADPCGFSGVFCDGDRVIALNLGDPRAGSPGLSGRIDPAIGKLSALAELTIVPGRVVGSLPRTLSQLKSLRFLAISRNFISGDIPAGLGQLRRLQTLDLSFNQLTGAIPRPVGALPALANVVLCNNHLTGSIPPFVSQELARLDLKHNNLAGSISSLGFPPSLQYISLSSNRLSGSLDRVFSGLNKLSYLDLSMNQLTGSIPVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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