当前解析结果
SmilChr01G004032| 统一新 Gene ID | SmilChr01G004032 |
|---|---|
| 名称 | SmilChr01G004032 |
| 描述 | piezo-type mechanosensitive ion channel homolog |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 58741048 - 58757991 / + |
| NCBI Gene ID | LOC130998874 |
|---|---|
| GeneID | 130998874 |
| locus_tag | - |
| NCBI Name | LOC130998874 |
| 原始查询 | SmilChr01G004032 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | piezo-type mechanosensitive ion channel homolog |
| 产物 | piezo-type mechanosensitive ion channel homolog |
| Arabidopsis | AT2G48060 (AT2G48060)piezo-type mechanosensitive ion channel component [Source:NCBI gene (formerly Entrezgene);Acc:819418] identity=63.8; qcov=1; evalue=0; confidence=high |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF12166 (Piezo_cap); PF23188 (THU_Piezo1); PF24874 (Piezo_THU9_anchor); PF25288 (PIEZO) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998874 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057780283.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057780283.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057780283.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057780310.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057780283.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:58742410 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B88 |
Chr1:58742410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr1:58742608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B57,B63,C43 |
Chr1:58742669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B66 |
Chr1:58742725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr1:58743073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B113,B126,B33,B76 |
Chr1:58743363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B62,B89,C34,D8 |
Chr1:58743462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr1:58743505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr1:58744933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr1:58744942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:58744972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780283.1PF25288
PIEZO 471-600 aa
PF23188
THU_Piezo1 1618-1737 aa
PF24874
Piezo_THU9_anchor 1929-2166 aa
PF12166
Piezo_cap 2195-2468 aa
XP_057780288.1PF25288
PIEZO 471-600 aa
PF23188
THU_Piezo1 1618-1737 aa
PF24874
Piezo_THU9_anchor 1929-2166 aa
PF12166
Piezo_cap 2195-2468 aa
XP_057780295.1PF25288
PIEZO 471-600 aa
PF23188
THU_Piezo1 1618-1737 aa
PF24874
Piezo_THU9_anchor 1929-2166 aa
PF12166
Piezo_cap 2195-2467 aa
XP_057780302.1PF25288
PIEZO 197-326 aa
PF23188
THU_Piezo1 1344-1463 aa
PF24874
Piezo_THU9_anchor 1655-1892 aa
PF12166
Piezo_cap 1921-2194 aa
XP_057780310.1PF25288
PIEZO 471-600 aa
PF23188
THU_Piezo1 1618-1737 aa
PF24874
Piezo_THU9_anchor 1929-2111 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780283.1 |
Pfam | PF25288 |
PIEZO | Domain | 471 | 600 | 2.9e-60 | 202.9 | Piezo-type mechanosensitive ion channel homolog domain |
XP_057780283.1 |
Pfam | PF23188 |
THU_Piezo1 | Domain | 1618 | 1737 | 2.7e-16 | 60.4 | Piezo1-like, transmembrane helical unit |
XP_057780283.1 |
Pfam | PF24874 |
Piezo_THU9_anchor | Domain | 1929 | 2166 | 9.3e-68 | 228.8 | Piezo, THU9 and anchor domain |
XP_057780283.1 |
Pfam | PF12166 |
Piezo_cap | Domain | 2195 | 2468 | 4.8e-73 | 247.1 | Piezo non-specific cation channel, cap domain |
XP_057780288.1 |
Pfam | PF25288 |
PIEZO | Domain | 471 | 600 | 2.9e-60 | 202.9 | Piezo-type mechanosensitive ion channel homolog domain |
XP_057780288.1 |
Pfam | PF23188 |
THU_Piezo1 | Domain | 1618 | 1737 | 2.7e-16 | 60.4 | Piezo1-like, transmembrane helical unit |
XP_057780288.1 |
Pfam | PF24874 |
Piezo_THU9_anchor | Domain | 1929 | 2166 | 9.3e-68 | 228.8 | Piezo, THU9 and anchor domain |
XP_057780288.1 |
Pfam | PF12166 |
Piezo_cap | Domain | 2195 | 2468 | 4.8e-73 | 247.1 | Piezo non-specific cation channel, cap domain |
XP_057780295.1 |
Pfam | PF25288 |
PIEZO | Domain | 471 | 600 | 2.9e-60 | 202.9 | Piezo-type mechanosensitive ion channel homolog domain |
XP_057780295.1 |
Pfam | PF23188 |
THU_Piezo1 | Domain | 1618 | 1737 | 2.7e-16 | 60.4 | Piezo1-like, transmembrane helical unit |
XP_057780295.1 |
Pfam | PF24874 |
Piezo_THU9_anchor | Domain | 1929 | 2166 | 9.3e-68 | 228.8 | Piezo, THU9 and anchor domain |
XP_057780295.1 |
Pfam | PF12166 |
Piezo_cap | Domain | 2195 | 2467 | 1.5e-72 | 245.5 | Piezo non-specific cation channel, cap domain |
XP_057780302.1 |
Pfam | PF25288 |
PIEZO | Domain | 197 | 326 | 2.5e-60 | 203.1 | Piezo-type mechanosensitive ion channel homolog domain |
XP_057780302.1 |
Pfam | PF23188 |
THU_Piezo1 | Domain | 1344 | 1463 | 2.4e-16 | 60.6 | Piezo1-like, transmembrane helical unit |
XP_057780302.1 |
Pfam | PF24874 |
Piezo_THU9_anchor | Domain | 1655 | 1892 | 8e-68 | 229.1 | Piezo, THU9 and anchor domain |
XP_057780302.1 |
Pfam | PF12166 |
Piezo_cap | Domain | 1921 | 2194 | 3.6e-73 | 247.5 | Piezo non-specific cation channel, cap domain |
XP_057780310.1 |
Pfam | PF25288 |
PIEZO | Domain | 471 | 600 | 2.4e-60 | 203.2 | Piezo-type mechanosensitive ion channel homolog domain |
XP_057780310.1 |
Pfam | PF23188 |
THU_Piezo1 | Domain | 1618 | 1737 | 2.3e-16 | 60.7 | Piezo1-like, transmembrane helical unit |
XP_057780310.1 |
Pfam | PF24874 |
Piezo_THU9_anchor | Domain | 1929 | 2111 | 9.6e-46 | 156.8 | Piezo, THU9 and anchor domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。