Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004042

染色体: Chr01 坐标: 58828095-58831735 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004042
名称SmilChr01G004042
描述uncharacterized SmilChr01G004042
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向58828095 - 58831735 / -

ID 对照

NCBI Gene IDLOC130998981
GeneID130998981
locus_tag-
NCBI NameLOC130998981
原始查询SmilChr01G004042

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os05g0143300; species=rice; confidence=low
产物hit=Os05g0143300; species=rice; confidence=low
ArabidopsisAT4G02920 (AT4G02920)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828139]
identity=31.3; qcov=0.838; evalue=2.49e-20; confidence=low
RiceOs05g0143300
-
identity=33.7; qcov=0.91; evalue=2.24e-30; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130998981

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057780414.1
2 Chromosome 染色体 0.00000 XP_057780414.1
3 Centromere 着丝粒 0.00000 XP_057780414.1
4 Chromatin 染色质 0.00000 XP_057780414.1
5 Telomere 端粒 0.00000 XP_057780414.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:58828677 G A EMS_canonical_SNV CDS_variant 1 C35
Chr1:58828758 C T EMS_canonical_SNV CDS_variant 1 C85
Chr1:58829787 C T EMS_canonical_SNV CDS_variant 5 A3,B135,B25,B88,C25
Chr1:58829854 G A EMS_canonical_SNV CDS_variant 1 C82
Chr1:58829980 G A EMS_canonical_SNV CDS_variant 1 C35
Chr1:58830105 G A EMS_canonical_SNV CDS_variant 1 C26
Chr1:58830566 G A EMS_canonical_SNV CDS_variant 1 C26
Chr1:58831420 G A EMS_canonical_SNV CDS_variant 1 C85

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057924431.1
AAGCCCCTATGACTCTGGTAAATGGCAGAAGATTCCAGAACCAGGACAAAGACAAAATGTCTTTTTTGTCGTCTTCACTAAAATCTGAATCTGTATTTCCCTTTTCCACGAAGCGCAGCCACACGAAATACCAAGTGGAACGTGAATCGCATAAAAATACCCATTTTTCTTGGTGACGAGCGAGGCTGCACAAAAAAAAAGTTCAAGAACAAGATATTTGGAAATTTGACCATTGAGAAAAATGGAGAAACAAAATTCTG...
XM_057924441.1
TCTGGTAAATGGCAGAAGATTCCAGAACCAGGACAAAGACAAAATGTCTTTTTTGTCGTCTTCACTAAAATCTGAATCTGTATTTCCCTTTTCCACGAAGCGCAGCCACACGAAATACCAAGTGGAACGTGAATCGCATAAAAATACCCATTTTTCTTGGTGACGAGCGAGGCTGCACAAAAAAAAAGTTCAAGAACAAGATATTTGGAAATTTGACCATTGAGAAAAATGGAGAAACAAAATTCTGATTATTGAAATCA...

CDS

2 records

下载 CDS FASTA
LOC130998981
ATGGATTTGGGCTTAATTGCTTCACATAATTGCCCTCCTGGATTGGGGGCTGTTTTCAATCCTGAACATGGTTTCAGCAGGGTGCCAAAGCAAAAGGATGAGTTGAAACTCAGAGGTGGACTACTGGACTGTAACAATTTAGCCTTGAAAAACTCTGTAAGGTCGACACTCATTGATGTTCAAGATATTCATCCACAGTCCCTACTCATGGGCTTCGGAATTGCTGAACAATGCACGAGGCATGAGAAGATATTGGAGTT...
LOC130998981
ATGGATTTGGGCTTAATTGCTTCACATAATTGCCCTCCTGGATTGGGGGCTGTTTTCAATCCTGAACATGGTTTCAGCAGGGTGCCAAAGGAATTGCATCCTTTTCTCCAACATCGCAGTCCAAATCAAGATCTTGTAAATTCTAAGTCCTTCAATTTATGCCTGCAGCAAAAGGATGAGTTGAAACTCAGAGGTGGACTACTGGACTGTAACAATTTAGCCTTGAAAAACTCTGTAAGGTCGACACTCATTGATGTTCA...

Protein

2 records

下载 Protein FASTA
XP_057780414.1
MDLGLIASHNCPPGLGAVFNPEHGFSRVPKELHPFLQHRSPNQDLVNSKSFNLCLQQKDELKLRGGLLDCNNLALKNSVRSTLIDVQDIHPQSLLMGFGIAEQCTRHEKILELLASGSIEVDDDFLDLSMLYDLMGPRQLLTDSAQQPFTSCSEQCLCDTKSLVYPARELYLNEPVLNVVGSRSSCRENTFHHMADDMTHAVPAISDLYFSKNTVASSRRTLLVPYFERRRRGRPNTDSSKLTTEKVAPPKSHVKVKAKT...
XP_057780424.1
MDLGLIASHNCPPGLGAVFNPEHGFSRVPKQKDELKLRGGLLDCNNLALKNSVRSTLIDVQDIHPQSLLMGFGIAEQCTRHEKILELLASGSIEVDDDFLDLSMLYDLMGPRQLLTDSAQQPFTSCSEQCLCDTKSLVYPARELYLNEPVLNVVGSRSSCRENTFHHMADDMTHAVPAISDLYFSKNTVASSRRTLLVPYFERRRRGRPNTDSSKLTTEKVAPPKSHVKVKAKTSQKRKTSPKMMKERDISCKSYLHACE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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