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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004051

染色体: Chr01 坐标: 58956726-58963950 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004051
名称SmilChr01G004051
描述DNA-directed RNA polymerases IV and V subunit 2-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向58956726 - 58963950 / -

ID 对照

NCBI Gene IDLOC130999066
GeneID130999066
locus_tag-
NCBI NameLOC130999066
原始查询SmilChr01G004051

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述DNA-directed RNA polymerases IV and V subunit 2-like
产物DNA-directed RNA polymerases IV and V subunit 2-like
ArabidopsisAT3G23780 (NRPD2A)
nuclear RNA polymerase D2A [Source:NCBI gene (formerly Entrezgene);Acc:821960]
identity=63.4; qcov=0.988; evalue=0; confidence=high
RiceOs04g0641000
-
identity=62.9; qcov=0.975; evalue=0; confidence=high
GOGO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005665 (RNA polymerase II, core complex); GO:0006351 (DNA-templated transcription); GO:0032549 (ribonucleoside binding)
KEGGsmil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
PfamPF00562 (RNA_pol_Rpb2_6); PF04560 (RNA_pol_Rpb2_7); PF04561 (RNA_pol_Rpb2_2); PF04563 (RNA_pol_Rpb2_1); PF04565 (RNA_pol_Rpb2_3); PF04566 (RNA_pol_Rpb2_4); PF04567 (RNA_pol_Rpb2_5)
InterPro-
eggNOG-
NRGeneID:130999066

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057780524.1
2 Nucleolus 核仁 0.40000 XP_057780524.1
3 Nucleoplasm 核质 0.40000 XP_057780524.1
4 Chromosome 染色体 0.00000 XP_057780524.1
5 Centromere 着丝粒 0.00000 XP_057780524.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:58956962 C T EMS_canonical_SNV CDS_variant 2 A4,B131
Chr1:58957036 C T EMS_canonical_SNV CDS_variant 5 A13,B50,B88,C11,C69
Chr1:58957114 G A EMS_canonical_SNV CDS_variant 3 B114,B46,B5
Chr1:58957228 C T EMS_canonical_SNV CDS_variant 5 B32,B64,B77,C1,C75
Chr1:58957315 G A EMS_canonical_SNV CDS_variant 2 B19,C9
Chr1:58958155 G A EMS_canonical_SNV CDS_variant 1 C35
Chr1:58959178 G A EMS_canonical_SNV CDS_variant 1 C80
Chr1:58959295 G A EMS_canonical_SNV CDS_variant 3 C2,C43,C55
Chr1:58959405 C T EMS_canonical_SNV CDS_variant 1 B82
Chr1:58959463 G A EMS_canonical_SNV CDS_variant 1 B95
Chr1:58959514 G A EMS_canonical_SNV CDS_variant 2 B86,C44
Chr1:58959750 C T EMS_canonical_SNV CDS_variant 2 A4,B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780524.1
1216 aa
N
1
608
1216
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
C
PF04563 RNA_pol_Rpb2_1 73-484 aa PF04561 RNA_pol_Rpb2_2 306-436 aa PF04565 RNA_pol_Rpb2_3 513-571 aa PF04566 RNA_pol_Rpb2_4 611-672 aa PF04567 RNA_pol_Rpb2_5 686-733 aa PF00562 RNA_pol_Rpb2_6 742-1113 aa PF04560 RNA_pol_Rpb2_7 1115-1213 aa
XP_057780531.1
1216 aa
N
1
608
1216
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
C
PF04563 RNA_pol_Rpb2_1 73-484 aa PF04561 RNA_pol_Rpb2_2 306-436 aa PF04565 RNA_pol_Rpb2_3 513-571 aa PF04566 RNA_pol_Rpb2_4 611-672 aa PF04567 RNA_pol_Rpb2_5 686-733 aa PF00562 RNA_pol_Rpb2_6 742-1113 aa PF04560 RNA_pol_Rpb2_7 1115-1213 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780524.1 Pfam PF04563 RNA_pol_Rpb2_1 Family 73 484 2.2e-33 116.2 RNA polymerase beta subunit
XP_057780524.1 Pfam PF04561 RNA_pol_Rpb2_2 Domain 306 436 3.9e-10 40.4 RNA polymerase Rpb2, domain 2
XP_057780524.1 Pfam PF04565 RNA_pol_Rpb2_3 Domain 513 571 2.7e-14 53.8 RNA polymerase Rpb2, domain 3
XP_057780524.1 Pfam PF04566 RNA_pol_Rpb2_4 Domain 611 672 5.5e-22 78.3 RNA polymerase Rpb2, domain 4
XP_057780524.1 Pfam PF04567 RNA_pol_Rpb2_5 Domain 686 733 3.3e-07 31.8 RNA polymerase Rpb2, domain 5
XP_057780524.1 Pfam PF00562 RNA_pol_Rpb2_6 Domain 742 1113 1e-105 354.7 RNA polymerase Rpb2, domain 6
XP_057780524.1 Pfam PF04560 RNA_pol_Rpb2_7 Domain 1115 1213 3e-27 95.6 RNA polymerase Rpb2, domain 7
XP_057780531.1 Pfam PF04563 RNA_pol_Rpb2_1 Family 73 484 2.2e-33 116.2 RNA polymerase beta subunit
XP_057780531.1 Pfam PF04561 RNA_pol_Rpb2_2 Domain 306 436 3.9e-10 40.4 RNA polymerase Rpb2, domain 2
XP_057780531.1 Pfam PF04565 RNA_pol_Rpb2_3 Domain 513 571 2.7e-14 53.8 RNA polymerase Rpb2, domain 3
XP_057780531.1 Pfam PF04566 RNA_pol_Rpb2_4 Domain 611 672 5.5e-22 78.3 RNA polymerase Rpb2, domain 4
XP_057780531.1 Pfam PF04567 RNA_pol_Rpb2_5 Domain 686 733 3.3e-07 31.8 RNA polymerase Rpb2, domain 5
XP_057780531.1 Pfam PF00562 RNA_pol_Rpb2_6 Domain 742 1113 1e-105 354.7 RNA polymerase Rpb2, domain 6
XP_057780531.1 Pfam PF04560 RNA_pol_Rpb2_7 Domain 1115 1213 3e-27 95.6 RNA polymerase Rpb2, domain 7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057924548.1
GGGAGTAAAAGAAAAGAACAATTGAGGAGTAACAGCTGCTACTGTGCTAGTAATTGCTCACACTGCCCAAAGTAGAGAACTGAAAATAATTGTTTTGAAAGGGGAAGAAAAGAAAAAAAAACACGCACCAAAATTGTGAAAACAATCGGTGCAAGTAGGCTGGAATTCGAGGCTGGTTTCTCTCCATCTTCTTGTTTTCGATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGAGAAG...
XM_057924541.1
GAACAATTGAGGAGTAACAGCTGCTACTGTGCTAGTAATTGCTCACACTGCCCAAAGTAGAGAACTGAAAATAATTGTTTTGAAAGGGGAAGAAAAGAAAAAAAAACACGCACCAAAATTGTGAAAACAATCGGTGCAAGTAGGCTGGAATTCGAGATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGAGAAGTTTTCTAATGGCTCGAGACAAATGGAATTTGATGATGATATAGA...

CDS

2 records

下载 CDS FASTA
LOC130999066
ATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGAGAAGTTTTCTAATGGCTCGAGACAAATGGAATTTGATGATGATATAGACTTCAACTATTCTGATTCTGAAGATGAGTTGGACTGTGCCCTGCAAGAAGTGGATAAAGGCTTCTTGAAAGGTTTCTGTAAGAAGGCTTCAACAGCGTTTTTTGAGCAATATGGTTTAATTAGCCACCAGATCAATTCTTACAATGACTTTGTTAA...
LOC130999066
ATGGATGGGTGGGATTTTATAGAAGAAGCAGGACCTAGCACTAGCAGCATCAAGGAGAAGTTTTCTAATGGCTCGAGACAAATGGAATTTGATGATGATATAGACTTCAACTATTCTGATTCTGAAGATGAGTTGGACTGTGCCCTGCAAGAAGTGGATAAAGGCTTCTTGAAAGGTTTCTGTAAGAAGGCTTCAACAGCGTTTTTTGAGCAATATGGTTTAATTAGCCACCAGATCAATTCTTACAATGACTTTGTTAA...

Protein

2 records

下载 Protein FASTA
XP_057780524.1
MDGWDFIEEAGPSTSSIKEKFSNGSRQMEFDDDIDFNYSDSEDELDCALQEVDKGFLKGFCKKASTAFFEQYGLISHQINSYNDFVKYGIQQVFDSVGEIMIEPGYDPSKRGDGEWRRATLKFGKVTLDRPTFWTGEKFSLADGAKEYLELLPRHAHLQNMTYSSRIKVQTHLQVYTEGLSRSDKFKTGVDKVVEKTMLNEYQTDVNFGRLPVMVKSDLCWMSRHEPNGEEKRDCEFDQGGYFVIKGAEKTFIAQEQICL...
XP_057780531.1
MDGWDFIEEAGPSTSSIKEKFSNGSRQMEFDDDIDFNYSDSEDELDCALQEVDKGFLKGFCKKASTAFFEQYGLISHQINSYNDFVKYGIQQVFDSVGEIMIEPGYDPSKRGDGEWRRATLKFGKVTLDRPTFWTGEKFSLADGAKEYLELLPRHAHLQNMTYSSRIKVQTHLQVYTEGLSRSDKFKTGVDKVVEKTMLNEYQTDVNFGRLPVMVKSDLCWMSRHEPNGEEKRDCEFDQGGYFVIKGAEKTFIAQEQICL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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