当前解析结果
SmilChr01G004062| 统一新 Gene ID | SmilChr01G004062 |
|---|---|
| 名称 | SmilChr01G004062 |
| 描述 | antifungal protein ginkbilobin-like protein |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59040510 - 59040893 / - |
| NCBI Gene ID | LOC131010813 |
|---|---|
| GeneID | 131010813 |
| locus_tag | - |
| NCBI Name | LOC131010813 |
| 原始查询 | SmilChr01G004062 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | antifungal protein ginkbilobin-like protein |
| 产物 | antifungal protein ginkbilobin-like protein |
| Arabidopsis | AT1G70690 (HWI1)Receptor-like protein kinase-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:843406] identity=27.2; qcov=0.984; evalue=3.38e-08; confidence=low |
| Rice | Os05g0493100- identity=43.5; qcov=0.488; evalue=2.01e-09; confidence=low |
| GO | GO:0009506 (plasmodesma) |
| KEGG | - |
| Pfam | PF01657 (Stress-antifung) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010813 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057794460.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057794460.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794460.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794460.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794460.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59040652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr1:59040657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B57,B77,C1,C41 |
Chr1:59040755 |
A |
AC |
1bp_insertion | frameshift_variant | 11 | B138,B35,B5,B51,B55,B84,C23,C38,C71,C75,D7 |
Chr1:59040756 |
G |
GTT |
2bp_insertion | frameshift_variant | 1 | C74 |
Chr1:59040756 |
G |
GTT |
2bp_insertion | CDS_variant | 1 | C74 |
Chr1:59040757 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | C74 |
Chr1:59040757 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | C74 |
Chr1:59040792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:59040872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794460.1PF01657
Stress-antifung 30-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794460.1 |
Pfam | PF01657 |
Stress-antifung | Family | 30 | 125 | 1.1e-10 | 42.8 | Salt stress response/antifungal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。