Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004075`

染色体: Chr01 坐标: 59195909-59201102 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004075`
名称	SmilChr01G004075
描述	ent-8-alpha-hydroxylabd-13-en-15-yl diphosphate synthase CPS4, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	59195909 - 59201102 / `+`

ID 对照

NCBI Gene ID	`LOC130999236`
GeneID	`130999236`
locus_tag	`-`
NCBI Name	`LOC130999236`
原始查询	`SmilChr01G004075`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ent-8-alpha-hydroxylabd-13-en-15-yl diphosphate synthase CPS4, chloroplastic-like
产物	ent-8-alpha-hydroxylabd-13-en-15-yl diphosphate synthase CPS4%2C chloroplastic-like
Arabidopsis	`AT4G02780` (GA1) Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828182] identity=47.8; qcov=0.917; evalue=0; confidence=high
Rice	`Os02g0278700` (OsCPS1) - identity=45.4; qcov=0.937; evalue=0; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0009507 (chloroplast); GO:0009686 (gibberellin biosynthetic process); GO:0010333 (terpene synthase activity)
KEGG	smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth)
InterPro	-
eggNOG	-
NR	GeneID:130999236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057780731.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057780731.1`
3	Cytosol	细胞质基质	0.20000	`XP_057780731.1`
4	Nucleus	细胞核	0.00000	`XP_057780731.1`
5	Chromosome	染色体	0.00000	`XP_057780731.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:59196233`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B133,B29,B4
`Chr1:59196233`	`TC`	`T`	1bp_deletion	CDS_variant	3	B133,B29,B4
`Chr1:59196789`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B100
`Chr1:59196789`	`TC`	`T`	1bp_deletion	CDS_variant	1	B100
`Chr1:59196792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:59196926`	`G`	`GAT`	2bp_insertion	frameshift_variant	1	C35
`Chr1:59196926`	`G`	`GAT`	2bp_insertion	CDS_variant	1	C35
`Chr1:59198582`	`AAG`	`A`	2bp_deletion	frameshift_variant	17	A13,A25,B3,B5,B50,B51,B52,B54,B75,B88,C11,C40,C49,C69,C75,C87,D6
`Chr1:59198671`	`CT`	`C`	1bp_deletion	frameshift_variant	4	B10,B139,C53,C59
`Chr1:59198671`	`CT`	`C`	1bp_deletion	CDS_variant	4	B10,B139,C53,C59
`Chr1:59198692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr1:59199172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780731.1

796 aa

398

796

Terpene_synth

PF01397 Terpene_synth 273-478 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780731.1`	Pfam	`PF01397`	Terpene_synth	Repeat	273	478	2.5e-43	148.7	Terpene synthase, N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924748.1
TAATTTTGAATCATATTTAGGCACACTTTGAAGGAGCTTATAATTAAGCTGTTTTAAAGAGCTGATAAGCTCAGGCAAACACCCTAATATCCCACCGAAATCACCTATAAATAAACGTAGCCCTATCTTCCATGCAACCCATCTCTTGTCCATATTATTTCTCTAAAATCAGTATTAGTATTGAATCAGACATGTCATTTGCGTCCAACGCCACCGGATTCCGCATTCCGCTAACAACCTGTGTTTATCCCTCCCCCATT...

CDS

1 records

下载 CDS FASTA

LOC130999236
ATGCAACCCATCTCTTGTCCATATTATTTCTCTAAAATCAGTATTAGTATTGAATCAGACATGTCATTTGCGTCCAACGCCACCGGATTCCGCATTCCGCTAACAACCTGTGTTTATCCCTCCCCCATTCTGCGATTCAATGCAAAGGTTGGGAGTGGAAGTAGTTATGGTACCACAGAGGCACAGAGAAACATGAAATGCGTAGATGGGATTGGCAGAAGTCGGGTAGTCGCAGTTGCAGCATCAGGTCGAACTTGGGA...

Protein

1 records

下载 Protein FASTA

XP_057780731.1
MQPISCPYYFSKISISIESDMSFASNATGFRIPLTTCVYPSPILRFNAKVGSGSSYGTTEAQRNMKCVDGIGRSRVVAVAASGRTWDSNPEVESEKMKEMIRWMFRDMDDGEVSVSAYDTAWVALVEDIGGSGGPQFPTSLDWISDNQLDDGSWGDRKFVLYDRILNTLACVVALTTWKLHPHKCEKGLKFIRENIEKLDNEDEELMLVGFEVALPSLIDLAKKLGIEISDDSPCIKNIYAKRDSKLKEIPMDLLHKEPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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