Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004086`

染色体: Chr01 坐标: 59269724-59273514 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004086`
名称	SmilChr01G004086
描述	frataxin, mitochondrial-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	59269724 - 59273514 / `+`

ID 对照

NCBI Gene ID	`LOC130999340`
GeneID	`130999340`
locus_tag	`-`
NCBI Name	`LOC130999340`
原始查询	`SmilChr01G004086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	frataxin, mitochondrial-like
产物	frataxin%2C mitochondrial-like
Arabidopsis	`AT4G03240` (FH) frataxin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828013] identity=72.6; qcov=0.639; evalue=2.07e-59; confidence=high
Rice	`Os01g0783600` (OsISC22) - identity=58.5; qcov=0.732; evalue=9.1e-60; confidence=high
GO	GO:0004322 (ferroxidase activity); GO:0005739 (mitochondrion); GO:0006879 (intracellular iron ion homeostasis); GO:0008198 (ferrous iron binding); GO:0008199 (ferric iron binding); GO:0018283 (iron incorporation into metallo-sulfur cluster); GO:0034986 (iron chaperone activity); GO:0051537 (2 iron, 2 sulfur cluster binding)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01491 (Frataxin_Cyay)
InterPro	-
eggNOG	-
NR	GeneID:130999340

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780847.1`
2	Nucleus	细胞核	0.00000	`XP_057780847.1`
3	Chromosome	染色体	0.00000	`XP_057780847.1`
4	Centromere	着丝粒	0.00000	`XP_057780847.1`
5	Chromatin	染色质	0.00000	`XP_057780847.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:59269920`	`GAA`	`G`	2bp_deletion	frameshift_variant	3	A16,A18,C71
`Chr1:59269920`	`GAA`	`G`	2bp_deletion	CDS_variant	3	A16,A18,C71
`Chr1:59270049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B15,B81,C12,C77
`Chr1:59270081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,B17
`Chr1:59270092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,B17
`Chr1:59270100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,C73,D11
`Chr1:59270124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,C19
`Chr1:59272289`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C83
`Chr1:59272289`	`TG`	`T`	1bp_deletion	CDS_variant	1	C83
`Chr1:59272321`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B43
`Chr1:59272321`	`GC`	`G`	1bp_deletion	CDS_variant	1	B43
`Chr1:59272326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B22,B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780847.1

194 aa

194

Frataxin_Cyay

PF01491 Frataxin_Cyay 83-188 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780847.1`	Pfam	`PF01491`	Frataxin_Cyay	Domain	83	188	3.3e-38	130.8	Frataxin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924864.1
AAATTTCTATCATCTAGAGAAAAGCTATAAATTTTAATGAAGCTCGTATAGAAGAAAAGCTATTCGGCCCATATAAAAGATATAGGCCTAACAAAAAAGGGCAAAACCCAAAATAAGAATAGTTTTCAGCTTCGATTCATTTTTCCGGGCCTCCGGCCACCGAGAAATCGAGAAATTATGGCGATTCGATCGCTGAGAAGAGCGGTGTTGAGAGCTCTGAGCCCTCTACAATCGTCGTCTTCTTTAATACCAGCAACGCA...

CDS

1 records

下载 CDS FASTA

LOC130999340
ATGGCGATTCGATCGCTGAGAAGAGCGGTGTTGAGAGCTCTGAGCCCTCTACAATCGTCGTCTTCTTTAATACCAGCAACGCAAAACTCATCGCTGTTTTCTCTCTCTAACTACTCAGCTGAACCCTCAACTTCTGCCAGTTATTCGTGCCCAAATTTCTCGTGCAATAGCATCCCCTGCCGCCGTCTCTCCTCTCTCACTGAGGAGGAATCTCACGGCCCCGCCGCGGTTAACTATTGCTCTTTGTTGACGGAAGAAGA...

Protein

1 records

下载 Protein FASTA

XP_057780847.1
MAIRSLRRAVLRALSPLQSSSSLIPATQNSSLFSLSNYSAEPSTSASYSCPNFSCNSIPCRRLSSLTEEESHGPAAVNYCSLLTEEEYHKLANSTIHDLLEKLEEYGDSVDIGGFDVDYGNEVLTLKLGDFGTCVINKQTPNRQIWMSSPVSGPSRFDWDQKAEAWIYKRTKQNLFKVLETELEKLCKKPISLS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器