Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004090`

染色体: Chr01 坐标: 59319395-59323696 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004090`
名称	SmilChr01G004090
描述	type I inositol polyphosphate 5-phosphatase 4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	59319395 - 59323696 / `-`

ID 对照

NCBI Gene ID	`LOC130999364`
GeneID	`130999364`
locus_tag	`-`
NCBI Name	`LOC130999364`
原始查询	`SmilChr01G004090`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	type I inositol polyphosphate 5-phosphatase 4-like
产物	type I inositol polyphosphate 5-phosphatase 4-like
Arabidopsis	`AT3G63240` (AT3G63240) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825499] identity=64.8; qcov=1; evalue=0; confidence=high
Rice	`Os03g0160600` - identity=63.6; qcov=0.989; evalue=0; confidence=high
GO	GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	-
Pfam	PF22669 (Exo_endo_phos2)
InterPro	-
eggNOG	-
NR	GeneID:130999364

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057780883.1`
2	Cytosol	细胞质基质	0.20000	`XP_057780883.1`
3	Cell membrane	细胞膜	0.20000	`XP_057780883.1`
4	Nucleus	细胞核	0.00000	`XP_057780883.1`
5	Chromosome	染色体	0.00000	`XP_057780883.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:59320217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr1:59320227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B91,C57,D10
`Chr1:59320670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B31,B47,D1
`Chr1:59320920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:59321185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:59321206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:59321556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:59321754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C51,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780883.1

561 aa

280

561

Exo_endo_phos2

PF22669 Exo_endo_phos2 99-163 aa PF22669 Exo_endo_phos2 285-517 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780883.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	99	163	3e-73	247.6	Endonuclease/Exonuclease/phosphatase family 2
`XP_057780883.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	285	517	3e-73	247.6	Endonuclease/Exonuclease/phosphatase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009093475.1
AATATAGGGTGACCGCGGGCAGTGTTGAAATGGAAGAGAAAGCGAGGGGAGTGGGGCCCGGGGTGGGGCGGGCAGCTGGGCATTGGCCATTGCGATGGGGTGTCCTGTTCCAATAGTGAGCAAATTTACAGTGCAATGCCACCCATTTATTTGGGTCGGCCCCCCACCCTCGTTTTGAGCCAAACCAAACCTCGAGAATCACACAGACTCGCACACTCTGTGTGTTTATTTTCCAATTTTATTCTTTTTCTCTTCTCGCC...

XM_057924900.1
AATATAGGGTGACCGCGGGCAGTGTTGAAATGGAAGAGAAAGCGAGGGGAGTGGGGCCCGGGGTGGGGCGGGCAGCTGGGCATTGGCCATTGCGATGGGGTGTCCTGTTCCAATAGTGAGCAAATTTACAGTGCAATGCCACCCATTTATTTGGGTCGGCCCCCCACCCTCGTTTTGAGCCAAACCAAACCTCGAGAATCACACAGACTCGCACACTCTGTGTGTTTATTTTCCAATTTTATTCTTTTTCTCTTCTCGCC...

CDS

1 records

下载 CDS FASTA

LOC130999364
ATGAGAGAAGATGGGAGCTCGAAGAAAAGCAAGCTTTCATGGCCTAAGACGTTAGTCAAGAAATGGTTCAACTTCCAGAGCAAAGATGGAGATTTTCATGCTGATGAAATAATTTATGGAGGTGTTGATGAAGAATGGAGGAACAACTTACCTGAGAGAGAGCAGCCATACACAATCAAGAAAAGCAAAACAGAAATACTGACTACTCGAAATCCAGAGTATATGAGGAGAAACAAGTTTGAGTTAGATTCCACTCAAAT...

Protein

1 records

下载 Protein FASTA

XP_057780883.1
MREDGSSKKSKLSWPKTLVKKWFNFQSKDGDFHADEIIYGGVDEEWRNNLPEREQPYTIKKSKTEILTTRNPEYMRRNKFELDSTQITDVEDYRIFVATWNVGGKSPPSYLNLEDWLHTSPPADLYVLGFQEIVPLNAGNVLGTEDNGPARKWQALIRKTLNSLPAAGGGGGDGVFTTPFTSPYELYDDLEGPNREHDPSFLPRHSVQSVSHSMRMMGSGVSMVQPKLDRRFSVCDRVMYGHRPSDYYDPNARWDASSDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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