Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004094`

染色体: Chr01 坐标: 59399844-59407917 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004094`
名称	SmilChr01G004094
描述	uncharacterized SmilChr01G004094
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	59399844 - 59407917 / `-`

ID 对照

NCBI Gene ID	`LOC130999387`
GeneID	`130999387`
locus_tag	`-`
NCBI Name	`LOC130999387`
原始查询	`SmilChr01G004094`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830348]; symbol=AT5G04700; hit=AT5G04700; species=arabidopsis; confidence=low
产物	Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830348]; symbol=AT5G04700; hit=AT5G04700; species=arabidopsis; confidence=low
Arabidopsis	`AT5G04700` (AT5G04700) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830348] identity=35.7; qcov=0.421; evalue=1.59e-48; confidence=low
Rice	`Os08g0401100` - identity=25.2; qcov=0.391; evalue=1.16e-13; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130999387

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057780905.1`
2	Nucleus	细胞核	0.00000	`XP_057780905.1`
3	Chromosome	染色体	0.00000	`XP_057780905.1`
4	Centromere	着丝粒	0.00000	`XP_057780905.1`
5	Chromatin	染色质	0.00000	`XP_057780905.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:59400226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,C19
`Chr1:59400469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr1:59400599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr1:59400681`	`T`	`TCA`	2bp_insertion	frameshift_variant	50	A11,A14,A16,A20,A21,A7,B101,B103,B104,B111,B12,B125,B130,B131,B135,B136,B2,B25,B30,B31,B36,B37,B43,B46,B47,B56,B61,B69,B7,B71,B76,B91,B92,B96,B98,C13,C20,C25,C38,C39,C40,C46,C50,C60,C61,C62,C66,C76,C81,C83
`Chr1:59400709`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B85
`Chr1:59400709`	`C`	`CA`	1bp_insertion	CDS_variant	1	B85
`Chr1:59400757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr1:59400758`	`A`	`AC`	1bp_insertion	frameshift_variant	1	C32
`Chr1:59400758`	`A`	`AC`	1bp_insertion	CDS_variant	1	C32
`Chr1:59400764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B10,B117,B16
`Chr1:59400773`	`AGC`	`*`	2bp_deletion	CDS_variant	1	B69
`Chr1:59400784`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B10,B117,B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780905.1

813 aa

406

813

Ank_2

Ank

PGG

PF12796 Ank_2 30-105 aa PF00023 Ank 48-68 aa PF13962 PGG 651-764 aa

XP_057780910.1

772 aa

386

772

Ank_2

Ank

PGG

PF12796 Ank_2 30-105 aa PF00023 Ank 48-68 aa PF13962 PGG 610-723 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780905.1`	Pfam	`PF12796`	Ank_2	Repeat	30	105	4.5e-24	85.6	Ankyrin repeats (3 copies)
`XP_057780905.1`	Pfam	`PF00023`	Ank	Repeat	48	68	1.2e-15	57.5	Ankyrin repeat
`XP_057780905.1`	Pfam	`PF13962`	PGG	Domain	651	764	1e-28	100.1	Domain of unknown function
`XP_057780910.1`	Pfam	`PF12796`	Ank_2	Repeat	30	105	3.2e-21	76.4	Ankyrin repeats (3 copies)
`XP_057780910.1`	Pfam	`PF00023`	Ank	Repeat	48	68	5.3e-15	55.4	Ankyrin repeat
`XP_057780910.1`	Pfam	`PF13962`	PGG	Domain	610	723	8.1e-29	100.5	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924922.1
AGAAAAAGGAAACTTGAATTCATATTCTCTTTCACAAATTAAATGATTCGATCACTATGTGAACTCATAAGTAGTAACGGAGCTTGCTTGTTCGGGGAGAAATGTGGTAAAGCCAAATTCCTCCAAAGAAGAGGATAAGACATTCCTACTCTCACAAAATATTTTGTTACAGAAGACATTCCTACTCTCACTCCCTCCACCACTTGCAAGTACTGTTATTTCGAGAGAGAGAGAGAGAGCATGAATCCACTGGCACAAGA...

XM_057924927.1
AAATTCCTCCAAAGAAGAGGATAAGACATTCCTACTCTCACAAAATATTTTGTTACAGAAGACATTCCTACTCTCACTCCCTCCACCACTTGCAAGTACTGTTATTTCGAGAGAGAGAGAGAGAGCATGAATCCACTGGCACAAGATGTGCTCCTGGAAGAAAACAAGAAATACCTATTCCAAAGCGCCATGAAAAGCAAGTGGGGCGAAGTGATCAAAGCATACAAAAAAAATAAACAACTTCACACCGCTAAGATCAC...

CDS

2 records

下载 CDS FASTA

LOC130999387
ATGAATCCACTGGCACAAGATGTGCTCCTGGAAGAAAACAAGAAATACCTATTCCAAAGCGCCATGAAAAGCAAGTGGGGCGAAGTGATCAAAGCATACAAAAAAAATAAACAACTTCACACCGCTAAGATCACCAGCTCCGGTGACACCGCGCTGCACATAGCCATCTCCAACGGCGAGGAGTCCGTCGTCGAGGAACTCGTCAAGATCGTCTCCAAAACTGAAGGAGCCCTCAAGATGCAGAACGAACTCGGCAACAC...

Protein

2 records

下载 Protein FASTA

XP_057780905.1
MNPLAQDVLLEENKKYLFQSAMKSKWGEVIKAYKKNKQLHTAKITSSGDTALHIAISNGEESVVEELVKIVSKTEGALKMQNELGNTPLHLAAYLSNANMCRCIASCDSTLMGIRNTDNETPFFLAVRHGSKDAFYALHSICKQSKDDAYKYSRGKEGETILHSAIYGEYFDLAFDIMTHYDKLLNAVNEHGLSPLHVLANKPTAFRSGSHVRGLHKLIYHCIFVDELQHETMHNQGVDLHYKDTAKYPENYHTCFTTFN...

XP_057780910.1
MNPLAQDVLLEENKKYLFQSAMKSKWGEVIKAYKKNKQLHTAKITSSGDTALHIAISNGEESVVEELVKIVSKTEGALKMQNELGNTPLHLAAYLSNANMCRCIASCDSTLMGIRNTDNETPFFLAVRHGNLAFDIMTHYDKLLNAVNEHGLSPLHVLANKPTAFRSGSHVRGLHKLIYHCIFVDELQHETMHNQGVDLHYKDTAKYPENYHTCFTTFNLLWDVMRVLLGYSRKKHVENIKREDVENPKGHQNILMMVLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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