当前解析结果
SmilChr01G004107| 统一新 Gene ID | SmilChr01G004107 |
|---|---|
| 名称 | SmilChr01G004107 |
| 描述 | 3-ketoacyl-CoA synthase 11-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59584356 - 59588797 / - |
| NCBI Gene ID | LOC130999506 |
|---|---|
| GeneID | 130999506 |
| locus_tag | - |
| NCBI Name | LOC130999506 |
| 原始查询 | SmilChr01G004107 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-ketoacyl-CoA synthase 11-like |
| 产物 | 3-ketoacyl-CoA synthase 11-like |
| Arabidopsis | AT2G26640 (KCS11)3-ketoacyl-CoA synthase 11 [Source:NCBI gene (formerly Entrezgene);Acc:817205] identity=46.8; qcov=0.922; evalue=2.66e-147; confidence=high |
| Rice | Os05g0574600 (OsCHS)- identity=45.4; qcov=0.929; evalue=1.01e-146; confidence=high |
| GO | GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999506 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057781031.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057781031.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781031.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781031.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781031.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59584537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B72,D10 |
Chr1:59584672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B28,C75 |
Chr1:59584678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B137 |
Chr1:59584799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,C19,C37 |
Chr1:59584821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:59584837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,C43,C9,D4 |
Chr1:59584881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,C61,C78 |
Chr1:59584898 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B22,B41 |
Chr1:59584898 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B22,B41 |
Chr1:59585022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B75 |
Chr1:59585122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
Chr1:59585175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781031.1PF08392
FAE1_CUT1_RppA 37-322 aa
PF08541
ACP_syn_III_C 341-421 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781031.1 |
Pfam | PF08392 |
FAE1_CUT1_RppA | Family | 37 | 322 | 4.9e-101 | 338.6 | FAE1/Type III polyketide synthase-like protein |
XP_057781031.1 |
Pfam | PF08541 |
ACP_syn_III_C | Domain | 341 | 421 | 2.1e-11 | 44.5 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。