当前解析结果
SmilChr01G004110| 统一新 Gene ID | SmilChr01G004110 |
|---|---|
| 名称 | SmilChr01G004110 |
| 描述 | auxin-induced protein 22D-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59608054 - 59609252 / - |
| NCBI Gene ID | LOC130999534 |
|---|---|
| GeneID | 130999534 |
| locus_tag | - |
| NCBI Name | LOC130999534 |
| 原始查询 | SmilChr01G004110 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | auxin-induced protein 22D-like |
| 产物 | auxin-induced protein 22D-like |
| Arabidopsis | AT5G43700 (ATAUX2-11)AUX/IAA transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:834390] identity=64.7; qcov=0.726; evalue=1.41e-75; confidence=high |
| Rice | Os12g0601400 (OsIAA3)- identity=52.4; qcov=0.808; evalue=7.83e-53; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02309 (AUX_IAA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999534 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781071.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057781071.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057781071.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057781071.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057781071.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59608387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:59608436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B32,C68 |
Chr1:59608525 |
A |
AAT |
2bp_insertion | frameshift_variant | 10 | B119,B128,B20,B74,B91,B97,C31,C56,C8,D9 |
Chr1:59608534 |
AC |
A |
1bp_deletion | frameshift_variant | 30 | A11,A7,B1,B10,B101,B105,B110,B118,B21,B25,B28,B6,B65,B7,B70,B8,B80,B81,C10,C19,C21,C24,C32,C36,C40,C52,C67,C73,D3,D6 |
Chr1:59608536 |
T |
TAA |
2bp_insertion | frameshift_variant | 33 | A11,A14,A7,B1,B10,B100,B101,B105,B110,B119,B21,B25,B28,B58,B6,B65,B70,B8,B80,B81,C10,C16,C21,C24,C32,C36,C40,C52,C67,C73,C84,D3,D6 |
Chr1:59608538 |
A |
ATG |
2bp_insertion | frameshift_variant | 17 | B100,B119,B128,B20,B27,B63,B71,B74,B88,B91,B95,B97,C13,C31,C56,C8,D9 |
Chr1:59608540 |
A |
AT |
1bp_insertion | frameshift_variant | 39 | A11,A14,A7,B1,B10,B100,B101,B105,B110,B118,B119,B137,B21,B25,B28,B57,B58,B6,B65,B70,B8,B80,B81,C10,C16,C19,C21,C24,C28,C32,C33,C36,C40,C52,C67,C73,C84,D3,D6 |
Chr1:59608546 |
A |
AT |
1bp_insertion | frameshift_variant | 39 | A11,A14,A7,B1,B10,B100,B101,B105,B110,B118,B137,B21,B25,B28,B55,B57,B6,B65,B7,B70,B8,B80,B81,C10,C16,C19,C21,C24,C28,C32,C33,C36,C40,C52,C67,C73,C84,D3,D6 |
Chr1:59608564 |
AG |
A |
1bp_deletion | frameshift_variant | 81 | A1,A15,A20,A22,A23,A8,B102,B103,B108,B109,B11,B113,B114,B115,B117,B119,B122,B126,B128,B131,B132,B135,B138,B139,B2,B20,B26,B27,B3,B39,B42,B44,B47,B52,B53,B63,B67,B69,B71,B73,B74,B84,B85,B88,B90,B91,B93,B97,B98,B99,C13,C14,C15,C20,C29,C31,C34,C37,C41,C44,C46,C51,C54,C56,C59,C61,C62,C63,C7,C76,C77,C79,C8,C83,C86,C87,C9,D11,D2,D7,D9 |
Chr1:59608567 |
TA |
T |
1bp_deletion | frameshift_variant | 85 | A1,A15,A20,A22,A23,A5,A8,B102,B103,B108,B109,B11,B113,B114,B115,B117,B119,B122,B126,B128,B131,B132,B135,B138,B139,B2,B20,B26,B27,B3,B39,B42,B44,B47,B52,B53,B63,B67,B69,B71,B73,B74,B84,B85,B88,B90,B91,B93,B97,B98,B99,C13,C14,C15,C17,C20,C29,C31,C34,C37,C4,C41,C43,C44,C46,C51,C54,C56,C59,C61,C62,C63,C7,C76,C77,C79,C8,C83,C86,C87,C9,D11,D2,D7,D9 |
Chr1:59608568 |
A |
ATG |
2bp_insertion | frameshift_variant | 145 | A10,A11,A14,A16,A18,A2,A21,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B100,B101,B104,B105,B106,B107,B110,B112,B114,B115,B118,B12,B120,B123,B124,B125,B129,B130,B132,B133,B134,B137,B14,B140,B16,B17,B21,B23,B24,B25,B29,B31,B35,B36,B37,B40,B41,B43,B44,B45,B46,B48,B49,B5,B50,B51,B54,B55,B56,B57,B59,B6,B60,B62,B64,B65,B66,B7,B70,B72,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B87,B9,B94,B98,C10,C11,C12,C16,C18,C19,C21,C22,C24,C25,C26,C27,C28,C3,C30,C32,C33,C34,C36,C39,C4,C40,C43,C48,C5,C52,C53,C55,C57,C58,C6,C60,C65,C66,C67,C69,C71,C72,C73,C74,C75,C78,C79,C81,C82,C84,D1,D10,D3,D4,D5,D6,D8 |
Chr1:59608585 |
T |
TTG |
2bp_insertion | frameshift_variant | 108 | A10,A11,A15,A20,A22,A4,B1,B10,B100,B104,B109,B11,B112,B115,B117,B118,B122,B125,B129,B133,B134,B137,B138,B16,B19,B2,B20,B24,B25,B26,B29,B3,B31,B40,B41,B44,B45,B49,B5,B50,B51,B52,B53,B55,B56,B59,B6,B62,B63,B64,B65,B69,B7,B71,B75,B8,B82,B83,B84,B88,B89,B9,B91,B98,C10,C12,C14,C17,C19,C21,C25,C26,C27,C28,C29,C32,C33,C37,C39,C4,C44,C46,C48,C5,C53,C54,C55,C58,C59,C60,C61,C62,C70,C71,C74,C76,C77,C78,C79,C8,C83,C84,C87,D10,D11,D6,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781071.1PF02309
AUX_IAA 78-255 aa
XP_057781079.1PF02309
AUX_IAA 83-231 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781071.1 |
Pfam | PF02309 |
AUX_IAA | Family | 78 | 255 | 4.4e-60 | 204.0 | AUX/IAA family |
XP_057781079.1 |
Pfam | PF02309 |
AUX_IAA | Family | 83 | 231 | 2.4e-59 | 201.5 | AUX/IAA family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。